Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate Echvi_3638 Echvi_3638 5-methyltetrahydrofolate--homocysteine methyltransferase
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Cola:Echvi_3638
Length = 902
Score = 1033 bits (2672), Expect = 0.0
Identities = 528/891 (59%), Positives = 659/891 (73%), Gaps = 13/891 (1%)
Query: 341 RLSGLEPLNIGEDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVENGAQIIDI 400
+LSGLEPL + FVN+GERTNVTGS KF RLI ++ EAL+VA QV GAQ++D+
Sbjct: 11 KLSGLEPLVFTPELNFVNIGERTNVTGSKKFARLILNGQFDEALEVALDQVRGGAQVLDV 70
Query: 401 NMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQGKGIVNSISMK 460
MDEGMLD EAAMV++LNLIA EP+I+R+PI++DSSKW++I GLKCIQGKGIVNSIS+K
Sbjct: 71 CMDEGMLDGEAAMVKYLNLIASEPEISRIPIVVDSSKWNIILAGLKCIQGKGIVNSISLK 130
Query: 461 EGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDII 520
G D FIH AK ++++GAAVVVMAFDE GQADT R+++IC+R+Y IL E V F P DII
Sbjct: 131 NGEDEFIHQAKTIKKFGAAVVVMAFDEDGQADTYQRRVDICKRSYDILVETVKFNPNDII 190
Query: 521 FDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIH 580
FDPNIF VATG+EEH + A DF A + IK LP A +SGGVSNVSFSFRGN+PVREA+H
Sbjct: 191 FDPNIFPVATGMEEHRSNAIDFFKATKWIKENLPGAKVSGGVSNVSFSFRGNNPVREAMH 250
Query: 581 AVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLELAEKYRG 640
A FLY+AI++GMDMGIVN L +YDD+P +L + VEDV+ +RRDD TERLL+ AE +
Sbjct: 251 AAFLYHAIQHGMDMGIVNPTMLEVYDDIPKDLLEHVEDVLWDRRDDATERLLDFAETVKS 310
Query: 641 SKTDDTANAQQAEWRSWEVNKRLEYSLVKGITEFIEQDTEEARQQATRPIEVIEGPLMDG 700
S + A+ WR+ V KR+E+SLVKGI + IE D EEARQ P++VIEGPLMDG
Sbjct: 311 SGKKEVAS---EAWRAESVEKRIEHSLVKGIIDHIESDAEEARQHLKSPLKVIEGPLMDG 367
Query: 701 MNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEAS-----KEQGKTNGKMVIATVK 755
MNVVGDLFG GKMFLPQVVKSARVMK+AVAYLEPF+ + E+ + K+++ATVK
Sbjct: 368 MNVVGDLFGSGKMFLPQVVKSARVMKKAVAYLEPFMPKAGDADFNEEKSSIKKVLLATVK 427
Query: 756 GDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMV 815
GDVHDIGKNIVGVVL CN+Y+I+DLGVMV A+ I+ A + + D+IGLSGLITPSLDEMV
Sbjct: 428 GDVHDIGKNIVGVVLACNSYQIIDLGVMVDAQTIIDEAIKQDVDIIGLSGLITPSLDEMV 487
Query: 816 NVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQ 875
NVA EMERQG IPLLIGGATTS+ HTAVKI+ YSG V+V +AS++V V +S+
Sbjct: 488 NVASEMERQGLKIPLLIGGATTSRIHTAVKIDPVYSGTVVHVLDASKSVPVAGEAISEDT 547
Query: 876 RDDFVARTRKEYETVRIQHGRKKPRTPPVTLEAARDNDFAFDWQAYTPPVAHRLGVQEVE 935
RD + + + Y +R H K+ T E A+ N DW Y P +LG ++
Sbjct: 548 RDAYHEQIKATYAELRESHQAKQEAKKLATYEEAKANPVVIDWDHYAPTKPAKLGRTILD 607
Query: 936 ASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKTLNP 995
I+TLRNYIDWTPFF TW L+GKYP+IL+DEVVGV+AQ+LF +AN MLDK+ E L
Sbjct: 608 LDIKTLRNYIDWTPFFSTWMLSGKYPKILKDEVVGVQAQKLFDEANAMLDKVIDENWLQA 667
Query: 996 RGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQTEK-TGFANYCLADFVAPKLSGK 1054
+ VVGL+P R GDD+ I DE H LRQQ +K G N LAD++ P+ +
Sbjct: 668 KAVVGLYPVKRSGDDLAIL-DENLHETGTTFHFLRQQGKKGKGVPNRSLADYLHPE---Q 723
Query: 1055 ADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKALADRLAEAFAEYLHERVRKVYWGY 1114
DY G FAVT GL D DAF+A+ DDYN+IM KA+ DRLAEA AEY+HE VRK WGY
Sbjct: 724 VDYFGGFAVTAGLNMDKKVDAFKAEGDDYNEIMFKAIGDRLAEAAAEYMHEVVRKELWGY 783
Query: 1115 APNENLSNEELIRENYQGIRPAPGYPACPEHTEKATIWELLEVEKHTGMKLTESFAMWPG 1174
AP E L N++LI+E+Y GIRPAPGYPACPEH+EK T++ELL+ + + LT+SFAM P
Sbjct: 784 APKEKLENDDLIKESYAGIRPAPGYPACPEHSEKVTLFELLDAQNSIDVHLTDSFAMLPT 843
Query: 1175 ASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLAPNLGYD 1225
+SVSG+YF HP+S+Y+ + +I DQVE YA+RKG+S + E+WL+PNL Y+
Sbjct: 844 SSVSGFYFGHPESRYFGLGKIGEDQVESYAKRKGVSKEQAEKWLSPNLAYN 894
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2652
Number of extensions: 92
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 902
Length adjustment: 45
Effective length of query: 1182
Effective length of database: 857
Effective search space: 1012974
Effective search space used: 1012974
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align methionine synthase; EC 2.1.1.13 (characterized)
to candidate Echvi_3639 Echvi_3639 Methionine synthase I (cobalamin-dependent), methyltransferase domain
Query= CharProtDB::CH_090726
(1227 letters)
>FitnessBrowser__Cola:Echvi_3639
Length = 347
Score = 383 bits (983), Expect = e-110
Identities = 190/340 (55%), Positives = 248/340 (72%), Gaps = 7/340 (2%)
Query: 1 MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFADWPCDLKGNNDLLVLSK 60
M+++ + L Q++++IL+LDG MGTMIQ Y L E DFR A+ P LKGNNDLL LS+
Sbjct: 1 MNTRTDILLQQVDKKILILDGAMGTMIQRYTLEEEDFRTPELANHPKALKGNNDLLSLSR 60
Query: 61 PEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAEINFAAAKLARACADEWTA 120
P++I IH+ Y EAGADIIETNTF+ST+IA DY + L+ E+N +A++AR A ++
Sbjct: 61 PKIIRDIHDTYLEAGADIIETNTFSSTSIAQEDYDLSQLAYELNVESARIAREAALSYSE 120
Query: 121 RTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDGLVAAYRESTKALVEGGADLILI 180
+TP++PR+VAG +GPTNRTASISPDVNDP +R I FD L AY E + L++GG D++L+
Sbjct: 121 KTPDQPRFVAGAIGPTNRTASISPDVNDPGYRAINFDQLSEAYAEQVRGLLDGGVDILLV 180
Query: 181 ETVFDTLNAKAAVFAVKTEFEALGVEL-------PIMISGTITDASGRTLSGQTTEAFYN 233
ET+FDTLNAKAA+FA++ FE G+ L PIMISGTITDASGRTLSGQTTEAF
Sbjct: 181 ETIFDTLNAKAALFAIQEVFEEKGLPLSPEEGGIPIMISGTITDASGRTLSGQTTEAFLI 240
Query: 234 SLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAK 293
S+ H ++ GLNCALG ELR Y++ L+ A YV+A+PNAGLPN FG+YD A MA
Sbjct: 241 SVSHVPLMSIGLNCALGAKELRPYLKVLAENAPFYVSAYPNAGLPNEFGQYDQTAQEMAD 300
Query: 294 QIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKL 333
Q+ E+ + G +NI+GGCCGTTP+HI + + PRKL
Sbjct: 301 QVEEFLKDGLINILGGCCGTTPEHIRVIGDVSKKYKPRKL 340
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 997
Number of extensions: 43
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1227
Length of database: 347
Length adjustment: 38
Effective length of query: 1189
Effective length of database: 309
Effective search space: 367401
Effective search space used: 367401
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Align candidate Echvi_3638 Echvi_3638 (5-methyltetrahydrofolate--homocysteine methyltransferase)
to HMM TIGR02082 (metH: methionine synthase (EC 2.1.1.13))
../bin/blast/fastacmd -i /tmp/list.26181.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26181.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.