Alignments for a candidate for metX in Echinicola vietnamensis KMM 6221, DSM 17526

Align Homoserine O-acetyltransferase; HAT; Homoserine transacetylase; HTA; EC 2.3.1.31 (characterized)
to candidate Echvi_3285 Echvi_3285 homoserine O-acetyltransferase

Query= SwissProt::G0J5N4
         (351 letters)



>FitnessBrowser__Cola:Echvi_3285
          Length = 351

 Score =  556 bits (1433), Expect = e-163
 Identities = 260/350 (74%), Positives = 304/350 (86%)

Query: 1   MNLQSPHLTIEMTQEIFYCQEALSLESGESFPEFQLSFTTQGQLNANKDNVIWVLHALTG 60
           MNL SP+L  +MTQE F+C+E L+LESGES P F++S+TTQG L   KDNVIW+LHALTG
Sbjct: 1   MNLTSPYLITDMTQETFHCEEELNLESGESLPGFEISYTTQGHLTPKKDNVIWILHALTG 60

Query: 61  DANPHEWWSGLIGEDKFFDPSKYFIVCANFLGSCYGSTQPLSNNPNNGKPYYYDFPNITT 120
           DAN HEWWSGL+GEDKFFDP+KYFIVCAN LGSCYGSTQPLS+NP  GKPYYYDFPN++T
Sbjct: 61  DANVHEWWSGLVGEDKFFDPTKYFIVCANLLGSCYGSTQPLSDNPKTGKPYYYDFPNLST 120

Query: 121 RDIASALDKLRIHLGLEKINTVIGGSLGGQVGLEWAVSLGEKLENAIIVASNAKASPWII 180
           RD+A A D+LR HLG+++I+T+IGGSLGGQV LEW+ +L E+++  IIVASNAK SPW I
Sbjct: 121 RDMAKAFDRLRQHLGIQQIDTIIGGSLGGQVALEWSYNLQEQVKKTIIVASNAKTSPWTI 180

Query: 181 GFNETQRMAIESDSTWGKTQPEAGKKGLETARAIGMLSYRHPMTFLQNQSETEEKRDDFK 240
           GFNE QRMAIESDSTWG+  P+AGKKGLE ARAIGMLSYRH   F  +Q+ETEEK D F+
Sbjct: 181 GFNEAQRMAIESDSTWGQNSPDAGKKGLEAARAIGMLSYRHQDIFHASQAETEEKTDHFR 240

Query: 241 ISSYLRYQGLKLANRFNAMSYWILSKAMDSHDIGRGRGGTPVALSNIKCKVLSIGVDTDI 300
           +SSYLRYQG KL+NRFNA+SYW+L+KAMDSHD+GRGRGGT  ALS IK KVLSIG++TD+
Sbjct: 241 VSSYLRYQGQKLSNRFNALSYWVLTKAMDSHDLGRGRGGTAKALSAIKAKVLSIGINTDL 300

Query: 301 LFTSEESRYISKHVPKGTYREISSIYGHDAFLIEYEQLQYILKSFYLENN 350
           LFT EES++ISK+VP GTYREISSIYGHDAFL+E EQL YIL SFYLENN
Sbjct: 301 LFTKEESQFISKNVPNGTYREISSIYGHDAFLVENEQLNYILTSFYLENN 350


Lambda     K      H
   0.317    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 478
Number of extensions: 6
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 351
Length adjustment: 29
Effective length of query: 322
Effective length of database: 322
Effective search space:   103684
Effective search space used:   103684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_3285 Echvi_3285 (homoserine O-acetyltransferase)
to HMM TIGR01392 (metX: homoserine O-acetyltransferase (EC 2.3.1.31))

Software error:

../bin/blast/fastacmd -i /tmp/list.649.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.649.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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