Alignments for a candidate for proB in Echinicola vietnamensis KMM 6221, DSM 17526

Align Glutamate 5-kinase; EC 2.7.2.11; Gamma-glutamyl kinase; GK (uncharacterized)
to candidate Echvi_4213 Echvi_4213 Glutamate 5-kinase

Query= curated2:Q1WRR5
         (267 letters)



>FitnessBrowser__Cola:Echvi_4213
          Length = 263

 Score =  135 bits (339), Expect = 1e-36
 Identities = 88/265 (33%), Positives = 148/265 (55%), Gaps = 10/265 (3%)

Query: 1   MENRNLQDAKRIVVKVGTSSLIRANGKINLQAIDELCYTLSGLVNEDKEVVLVSSGAVGV 60
           MEN + +  ++IVVKVG++ L     +I    +  L   L+ L  ++   +L++SG+V  
Sbjct: 1   MENLS-KKPRKIVVKVGSNMLTNHKNRIMDTVLQHLVGQLAELYEDNIMPILITSGSVAA 59

Query: 61  GLANMGLVQRPKQ-IPEQQALAAIGQSQLMTIYQQRFAMYSQKTSQILLTHDVLTYPESR 119
           G+  MG     K     +Q  +++GQ +LM  Y + F  Y  +  Q+L T    +  + R
Sbjct: 60  GMEAMGRELSIKDDAVRRQIYSSMGQPRLMRHYYEIFQQYGIRCGQVLATKRDFSPGKHR 119

Query: 120 ENVLNTFNELLKWKVIPVVNENDTVAVDEMDHQTSFGDNDWLSAVVASGIDADLLIVLSD 179
           EN++N +N L+   ++P+ NE+DTV++      ++F DND L+A+VA  ++AD+LI L+ 
Sbjct: 120 ENMINCYNGLIASGIVPIANEDDTVSLS----MSAFSDNDELAALVAELLEADMLIFLTH 175

Query: 180 IDGLFNKNPKKYADANLISEVTEINEKITGAAGGTG--SRFGTGGMATKIKAMDRMINEG 237
            DG+FN  P   A   ++ EV +I+EK        G     G G MA+K+K   +  ++ 
Sbjct: 176 KDGVFN-GPPDAAHTEVLEEV-KIDEKTEQYIHDKGDPKTIGRGNMASKLKMAKKAASKN 233

Query: 238 RKAVLANGKRPSIIFEILNGKQIGT 262
               +ANG  P+++ +I+NGKQIGT
Sbjct: 234 IAVHIANGTTPNVLLDIVNGKQIGT 258


Lambda     K      H
   0.315    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 9
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 263
Length adjustment: 25
Effective length of query: 242
Effective length of database: 238
Effective search space:    57596
Effective search space used:    57596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_4213 Echvi_4213 (Glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.2465.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2465.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.