Alignments for a candidate for proC in Echinicola vietnamensis KMM 6221, DSM 17526

Align pyrroline-5-carboxylate reductase (EC 1.5.1.2) (characterized)
to candidate Echvi_2479 Echvi_2479 pyrroline-5-carboxylate reductase

Query= reanno::Pedo557:CA265_RS18505
         (269 letters)



>FitnessBrowser__Cola:Echvi_2479
          Length = 265

 Score =  231 bits (589), Expect = 1e-65
 Identities = 117/255 (45%), Positives = 170/255 (66%)

Query: 3   KIAIIGSGNIGLSLAKGLVKANYTTTKNIILTRRNTANLYKFAQERYKVTANNADAAADA 62
           KIAIIG GN+GLS+  GL++      KN+++T+R+  NL         VTA+N  AA  A
Sbjct: 5   KIAIIGCGNLGLSIVNGLLETEGFEAKNLMVTKRHPENLSHLQSLGVTVTADNKSAAKAA 64

Query: 63  DVIILAVLPQQLNVVLEEIQSAINPAKHLVISVISGVSCAAVREKLDSNVQIIRAMPNTA 122
           D++IL V P  +  +L+EI   ++P K  +IS+ +GV+   + + L S   + RAMPN A
Sbjct: 65  DLVILGVKPYNIPHILKEIAPVVSPDKQTIISLATGVTLEEMYQHLPSTTALYRAMPNIA 124

Query: 123 IAIGQSMTCIASDNASPQNLEDVTRMFETVGSVVKINEDLMTSATALCACGIAFFLRGIR 182
             I +S+TCI   N++P+N + +  +F ++G  + I E LM +AT L ACGIA+ LR +R
Sbjct: 125 ADIQESITCICGQNSTPENEDIIKALFNSIGISIIIEEHLMEAATVLGACGIAYVLRFMR 184

Query: 183 AASQGGVEIGFHADEALKMAVQTAKGAADLLLLHGTHPESEIDKVTSPKGCTIAGLNEME 242
           A +QGG++IGF A  A  +  QT KGAA+LL+  G HPE+ IDKVT+PKGCTI GLNEME
Sbjct: 185 AMTQGGIQIGFDAKTANTIVNQTVKGAAELLIKKGIHPEAAIDKVTTPKGCTIVGLNEME 244

Query: 243 HNGYSSSLIKGIKLS 257
           H+G+S++++KG+  S
Sbjct: 245 HHGFSAAMVKGVLAS 259


Lambda     K      H
   0.316    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 202
Number of extensions: 7
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 265
Length adjustment: 25
Effective length of query: 244
Effective length of database: 240
Effective search space:    58560
Effective search space used:    58560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_2479 Echvi_2479 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.3348.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3348.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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