Alignments for a candidate for asd in Echinicola vietnamensis KMM 6221, DSM 17526

Align aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) (characterized)
to candidate Echvi_0713 Echvi_0713 aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Query= metacyc::MONOMER-6564
         (346 letters)



>FitnessBrowser__Cola:Echvi_0713
          Length = 329

 Score =  315 bits (807), Expect = 1e-90
 Identities = 169/343 (49%), Positives = 233/343 (67%), Gaps = 15/343 (4%)

Query: 5   LHVAVVGATGAVGQQMLKTLEDRNFEMDTLTLLSSKRSAGTKVTFKGQELTVQEASPESF 64
           + +AVVGATG VG ++L+ L + NF  D L L++S+RSAG K+ FK +E TV   +    
Sbjct: 1   MKLAVVGATGLVGSEILEVLAEHNFPFDELLLVASERSAGKKIAFKDKEYTVIGLAQAVS 60

Query: 65  EGVNIALFSAGGSVSQALAPEAVKRGAIVIDNTSAFRMDENTPLVVPEVNEADLHEHNGI 124
           E  +IA+FSAGG  S+  AP+  + G IV+DN+SA+RMD    LVVPE+N   L   + I
Sbjct: 61  EKPDIAIFSAGGDTSKEWAPKFAEAGTIVVDNSSAWRMDPTKKLVVPEINAKSLKIDDRI 120

Query: 125 IANPNCSTIQMVAALEPIRKAYGLNKVIVSTYQAVSGAGNEAVKELYSQTQAILNKEEIE 184
           IANPNCSTIQMV AL  +R  YG+ +V+VSTYQ+V+G+G +AV +L             +
Sbjct: 121 IANPNCSTIQMVLALTKLRDRYGIKRVVVSTYQSVTGSGLKAVNQL-------------Q 167

Query: 185 PEIMPVKGDKKH-YQIAFNAIPQIDKFQDNGYTFEEMKMINETKKIMHMPDLQVAATCVR 243
            E    +G+K + ++I  N +P ID FQDNGYT EEMKMINETKKI   P +QV AT VR
Sbjct: 168 DERAGKEGEKAYPHKIDLNVLPHIDVFQDNGYTKEEMKMINETKKIFEDPSIQVTATTVR 227

Query: 244 LPIQTGHSESVYIEIDRDDATVEDIKNLLKEAPGVTLQDDPSQQLYPMPADAVGKNDVFV 303
           +P+  GHSESV +E  ++D  +E++K LL   PGV ++DD +  +YPMP +A  K++VFV
Sbjct: 228 IPVMGGHSESVNVEF-KEDFDLEEVKELLAATPGVVVEDDVANNVYPMPMNAHKKDEVFV 286

Query: 304 GRIRKDLDRANGFHLWVVSDNLLKGAAWNSVQIAESLKKLNLV 346
           GR+R+D  + N  ++W+V+DNL KGAA N+VQIAE L + +LV
Sbjct: 287 GRLRRDESQPNTLNMWIVADNLRKGAATNAVQIAEYLVEHSLV 329


Lambda     K      H
   0.314    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 8
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 329
Length adjustment: 28
Effective length of query: 318
Effective length of database: 301
Effective search space:    95718
Effective search space used:    95718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)

Align candidate Echvi_0713 Echvi_0713 (aspartate-semialdehyde dehydrogenase (peptidoglycan organisms))
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.25776.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.25776.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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