Alignments for a candidate for thrB in Echinicola vietnamensis KMM 6221, DSM 17526

Align homoserine kinase (EC 2.7.1.39) (characterized)
to candidate Echvi_2001 Echvi_2001 homoserine kinase

Query= reanno::Cola:Echvi_2001
         (311 letters)



>FitnessBrowser__Cola:Echvi_2001
          Length = 311

 Score =  605 bits (1561), Expect = e-178
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MKKVTAFAPATVANVSCGFDILGFAVEEMGDKVTVSLADEPGVRVVRIEGDGGRLPYEVD 60
           MKKVTAFAPATVANVSCGFDILGFAVEEMGDKVTVSLADEPGVRVVRIEGDGGRLPYEVD
Sbjct: 1   MKKVTAFAPATVANVSCGFDILGFAVEEMGDKVTVSLADEPGVRVVRIEGDGGRLPYEVD 60

Query: 61  KNTCGVALKAFLAAIDYKGGLEVELYKGLPLGSGMGSSAASSVAALEAANQLLGNPLDKK 120
           KNTCGVALKAFLAAIDYKGGLEVELYKGLPLGSGMGSSAASSVAALEAANQLLGNPLDKK
Sbjct: 61  KNTCGVALKAFLAAIDYKGGLEVELYKGLPLGSGMGSSAASSVAALEAANQLLGNPLDKK 120

Query: 121 ALLPFAMKAEGVACGAEHADNVAPSLLGGFVLIRSYHPLDVTKLHVPKGLYCALVHPHLE 180
           ALLPFAMKAEGVACGAEHADNVAPSLLGGFVLIRSYHPLDVTKLHVPKGLYCALVHPHLE
Sbjct: 121 ALLPFAMKAEGVACGAEHADNVAPSLLGGFVLIRSYHPLDVTKLHVPKGLYCALVHPHLE 180

Query: 181 LNTADSRSVLRQQVPLKDAITQSGNIAGLVAGLYQEDMGLISRSLQDVIAEPSRSVLIPG 240
           LNTADSRSVLRQQVPLKDAITQSGNIAGLVAGLYQEDMGLISRSLQDVIAEPSRSVLIPG
Sbjct: 181 LNTADSRSVLRQQVPLKDAITQSGNIAGLVAGLYQEDMGLISRSLQDVIAEPSRSVLIPG 240

Query: 241 FDEIKSAIKEVGALGVGISGSGPTTFILAPSREVAERASEICQEVFDKIGLEVDLYVSAV 300
           FDEIKSAIKEVGALGVGISGSGPTTFILAPSREVAERASEICQEVFDKIGLEVDLYVSAV
Sbjct: 241 FDEIKSAIKEVGALGVGISGSGPTTFILAPSREVAERASEICQEVFDKIGLEVDLYVSAV 300

Query: 301 NTKGTYVINKA 311
           NTKGTYVINKA
Sbjct: 301 NTKGTYVINKA 311


Lambda     K      H
   0.317    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 468
Number of extensions: 13
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 311
Length adjustment: 27
Effective length of query: 284
Effective length of database: 284
Effective search space:    80656
Effective search space used:    80656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)

Align candidate Echvi_2001 Echvi_2001 (homoserine kinase)
to HMM TIGR00191 (thrB: homoserine kinase (EC 2.7.1.39))

Software error:

../bin/blast/fastacmd -i /tmp/list.6155.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6155.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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