Alignments for a candidate for thrC in Echinicola vietnamensis KMM 6221, DSM 17526

Align threonine synthase (EC 4.2.3.1) (characterized)
to candidate Echvi_2002 Echvi_2002 threonine synthase

Query= BRENDA::P00934
         (428 letters)



>FitnessBrowser__Cola:Echvi_2002
          Length = 430

 Score =  344 bits (883), Expect = 3e-99
 Identities = 187/410 (45%), Positives = 271/410 (66%), Gaps = 8/410 (1%)

Query: 1   MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60
           MK Y+  +   +VS  +AV +GL  +QGL+ P  +P      ID++ +  F     +++ 
Sbjct: 1   MKFYSTNNKEHKVSLKEAVIKGLAPDQGLYMPERIPTLPADFIDQLPERSFQEIGYEVIG 60

Query: 61  AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120
           A  G+++ +E ++E V    AF AP+  VE +V  LELFHGPTLAFKDFG RF +++++ 
Sbjct: 61  AIFGEDLSKEQIKELVDHTLAFDAPLVKVEEEVYTLELFHGPTLAFKDFGARFCSKLMSL 120

Query: 121 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180
           +  D+ V +L ATSGDTG+AVA+ FY +P V+V+ILYP GK+S LQEK F TLG NI  +
Sbjct: 121 LVKDEKVRVLVATSGDTGSAVANGFYKVPGVEVIILYPSGKVSTLQEKQFTTLGENITAL 180

Query: 181 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQETRNQ 240
            +DG FD CQ +VKQAF D++L  ++ L SANSINI+R + Q  YYF A ++LP +   +
Sbjct: 181 EVDGVFDDCQRMVKQAFLDKDLNESMLLTSANSINIARWIPQCLYYFYAYSRLP-KGHEK 239

Query: 241 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA 300
           +V SVPSGNFG++ AG+LA+ +GLP++ F+AATNVN  VP FL    + P+ +  T+SN+
Sbjct: 240 VVFSVPSGNFGNIAAGMLAERMGLPIETFVAATNVNKIVPDFLKGVPFRPRPSLQTISNS 299

Query: 301 MDVSQPNNWPRVEELFRRKIWQLKEL--GYAAVDDETTQQTMRELK-ELGYTSEPHAAVA 357
           MDV  P+N+ R+ +L+  +  +LKE+  G+   DD TT++ M  +K   GY  +PH AVA
Sbjct: 300 MDVGNPSNFYRLLDLYGDES-KLKEMVKGF-FFDDATTREAMATVKAAAGYLMDPHGAVA 357

Query: 358 YRALRDQL--NPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERAD 405
           Y  L+  +  +PG  G+FL TAHP KF + VEA+  E + LP+ LA   D
Sbjct: 358 YLGLKAYMEEHPGYTGVFLETAHPGKFGDVVEAVHQEKVTLPERLAAFLD 407


Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 448
Number of extensions: 19
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 430
Length adjustment: 32
Effective length of query: 396
Effective length of database: 398
Effective search space:   157608
Effective search space used:   157608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)

Align candidate Echvi_2002 Echvi_2002 (threonine synthase)
to HMM TIGR00260 (thrC: threonine synthase (EC 4.2.3.1))

Software error:

../bin/blast/fastacmd -i /tmp/list.2432.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.2432.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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