Alignments for a candidate for trpA in Echinicola vietnamensis KMM 6221, DSM 17526

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate Echvi_2511 Echvi_2511 tryptophan synthase, alpha subunit

Query= uniprot:A0A3N7DTH5
         (255 letters)



>FitnessBrowser__Cola:Echvi_2511
          Length = 258

 Score =  302 bits (774), Expect = 4e-87
 Identities = 145/242 (59%), Positives = 189/242 (78%), Gaps = 1/242 (0%)

Query: 1   MNRINKLFQEKK-NILSIYYTAGYPNLGDTVAIAEELERSGADLLEIGFPYSDPVADGPV 59
           MNRI++LFQEKK NILSIY+TAG+P L DT+AI E +E +GAD++E+G PYSDPVADGP 
Sbjct: 1   MNRIDQLFQEKKGNILSIYFTAGFPKLDDTLAIMEAIEGAGADIIEVGMPYSDPVADGPT 60

Query: 60  IQASSKTALDGGMTLKLLFEQLKDLRKTVNIPVLLMGYVNPMLQYGVENFCKSCAEVGVD 119
           IQ S+K AL+ GM +K +F+QL+ +R+TV IPV+LMGY+NP+LQYG+E FCK C EVGVD
Sbjct: 61  IQESNKAALENGMNMKKMFQQLEKMRETVTIPVVLMGYLNPILQYGIEAFCKKCNEVGVD 120

Query: 120 GCIVPDLPMVEYEELYSGVFEANGLTNIFLVTPQTSTERIRKIDGLSNGFIYLLSSSATT 179
           G IVPDLP+ +Y++ Y  +F+   L N FL++PQTS ERIR+ID  S+GFIY++SS + T
Sbjct: 121 GLIVPDLPIQQYQDDYKALFDEYDLRNTFLISPQTSEERIREIDQQSDGFIYMVSSHSIT 180

Query: 180 GQNLQVSENTEAYFSRIAEMKLNNPTMIGFGISSKETFDKACQYANGAIIGSAFVKSLKS 239
           G    +S+  EAYF R+  M+L NP +IGFGIS   TF KA  Y++GAIIGSAF+K L +
Sbjct: 181 GAKSGISDEQEAYFERVKSMELENPRLIGFGISDHATFSKASSYSHGAIIGSAFIKVLSN 240

Query: 240 GK 241
            K
Sbjct: 241 AK 242


Lambda     K      H
   0.317    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 230
Number of extensions: 6
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 258
Length adjustment: 24
Effective length of query: 231
Effective length of database: 234
Effective search space:    54054
Effective search space used:    54054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)

Align candidate Echvi_2511 Echvi_2511 (tryptophan synthase, alpha subunit)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.28453.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.28453.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.