Alignments for a candidate for trpB in Echinicola vietnamensis KMM 6221, DSM 17526

Align Tryptophan synthase beta chain 1; EC 4.2.1.20 (characterized, see rationale)
to candidate Echvi_2510 Echvi_2510 tryptophan synthase, beta subunit

Query= uniprot:P50383
         (425 letters)



>FitnessBrowser__Cola:Echvi_2510
          Length = 392

 Score =  141 bits (356), Expect = 3e-38
 Identities = 120/377 (31%), Positives = 178/377 (47%), Gaps = 43/377 (11%)

Query: 58  YIKIPE--EVRDRYLS-----IGRPTPLFRAKRLEEYLKTPARIYFKYEGATPTGSHKIN 110
           Y KI E  E +D + +     +GRPTPL+ AKRL +  +  A+IY K E    TG+HK+N
Sbjct: 33  YEKITESDEFKDEFHALLKDYVGRPTPLYYAKRLSQ--EYGAKIYLKREDLCHTGAHKVN 90

Query: 111 TAIPQAYFAKEEGIEHVVTETGAGQWGTAVALAASMYNMKSTIFMVKVSYEQKPMRRSIM 170
             I Q   AK+ G + ++ ETGAGQ G A A   ++  M  T++M  +  E++      M
Sbjct: 91  NTIGQIILAKKLGKKRIIAETGAGQHGVATATVCALMGMDCTVYMGAIDMERQKPNVERM 150

Query: 171 QLYGANVYASPTNLTEYGRKILETNPQHPGSLGIAMSEAIEYALKN--EFRYLVGSVL-- 226
           ++ GA V  + +     G + L+           A +EA+   + N  +  Y++GSV+  
Sbjct: 151 RILGAKVVPATS-----GSQTLKD----------ATNEALRQWINNPVDTHYIIGSVVGP 195

Query: 227 ----DVVLLHQSVIGQETITQLDLL--GEDADILIGCVGGGSNFGGFTYPFIGNKKGKRY 280
               ++V   QSVI +E   QL      ED D++I CVGGGSN  G  Y +  N    R 
Sbjct: 196 HPYPEMVARFQSVISEEIKYQLKEKEGKEDPDMVIACVGGGSNAAGAFYHYY-NTPSVRL 254

Query: 281 IAVSSAEIPKFSKGEYKYDFPDSAGLL---PLVKMITLGKDYVPPPIYAGGLRYHGVAPT 337
           +AV +A +   S          + G+L     + M T     V P   + GL Y G+ P 
Sbjct: 255 VAVEAAGLGVASGKSAATTALGTPGVLHGSKTLLMQTEDGQVVEPHSISAGLDYPGIGPV 314

Query: 338 LSLLTKEGIVEWREYNEREIFEAAKIFIENQGIVPAPESAHAIRAVVDEAIEARKNNERK 397
            + L      E+    + +  +A       +GI+PA ESAHA+       ++  K     
Sbjct: 315 HAHLFDSKRGEFYAVEDEDAMKAGVELSRLEGIIPAIESAHAL-----SVLKQLKFKPSD 369

Query: 398 VIVFNLSGHGLLDLSNY 414
           VIV NLSG G  DL  Y
Sbjct: 370 VIVINLSGRGDKDLDTY 386


Lambda     K      H
   0.318    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 406
Number of extensions: 18
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 392
Length adjustment: 31
Effective length of query: 394
Effective length of database: 361
Effective search space:   142234
Effective search space used:   142234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate Echvi_2510 Echvi_2510 (tryptophan synthase, beta subunit)
to HMM TIGR00263 (trpB: tryptophan synthase, beta subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.17842.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17842.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.