Alignments for a candidate for ilvH in Echinicola vietnamensis KMM 6221, DSM 17526

Align Acetolactate synthase small subunit; EC 2.2.1.6; Acetohydroxy-acid synthase small subunit; AHAS; ALS (uncharacterized)
to candidate Echvi_2057 Echvi_2057 acetolactate synthase, small subunit

Query= curated2:A0QUX7
         (170 letters)



>FitnessBrowser__Cola:Echvi_2057
          Length = 167

 Score = 95.9 bits (237), Expect = 3e-25
 Identities = 52/154 (33%), Positives = 93/154 (60%), Gaps = 1/154 (0%)

Query: 8   HTLSVLVEDKPGVLARVSSLFSRRGFNIQSLAVGATEQKDMSRMTIVVSVEDSPLEQITK 67
           +T+S+  E+  G+L RV+ +F+RRG NI +L    +++  + R+TI V+  +  + QI K
Sbjct: 4   YTVSLFTENFIGILNRVTLIFTRRGVNIDALTASESKEDGVHRITIEVTTTEDQVIQIVK 63

Query: 68  QLNKLINVIKIVEQEEDNSVSRELALIKVRADATTRGQIIEAVNLFRAKVVDVSTESLTI 127
           Q  K+I+VIK    ++D  V +E+AL K+   +   G + + +  + A+++    E + I
Sbjct: 64  QTEKIIDVIKSFYYKDDEVVYQEIALYKIPISSLDPG-LEKVIRQYNARIISAEKEFVVI 122

Query: 128 EATGTPEKLEALLRVLEPYGIREIAQSGVVSVSR 161
           E TG  E  +ALL +L+ + I E A+SG V+V++
Sbjct: 123 EMTGHKEDTKALLEILKDFNILEFARSGRVAVAK 156


Lambda     K      H
   0.313    0.130    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 4
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 167
Length adjustment: 18
Effective length of query: 152
Effective length of database: 149
Effective search space:    22648
Effective search space used:    22648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 43 (21.2 bits)

Align candidate Echvi_2057 Echvi_2057 (acetolactate synthase, small subunit)
to HMM TIGR00119 (ilvN: acetolactate synthase, small subunit (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.29830.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29830.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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