Align acetohydroxy-acid synthase large subunit (EC 2.2.1.6) (characterized)
to candidate Echvi_2056 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type
Query= metacyc::MONOMER-11900 (599 letters) >FitnessBrowser__Cola:Echvi_2056 Length = 564 Score = 452 bits (1164), Expect = e-131 Identities = 241/573 (42%), Positives = 353/573 (61%), Gaps = 21/573 (3%) Query: 1 MNGAEAMIKALEAEKVEILFGYPGGALLPFYDALH-HSDLI-HLLTRHEQAAAHAADGYA 58 + GAE +IK+L +E + +FGYPGGA++P YDAL+ ++D I H+LTRHEQ A HAA GYA Sbjct: 6 IRGAEIVIKSLVSENCDYIFGYPGGAIMPVYDALYDYADQIKHVLTRHEQGAIHAAQGYA 65 Query: 59 RASGKVGVCIGTSGPGATNLVTGVATAHSDSSPMVALTGQVPTKLIGNDAFQEIDALGLF 118 R SGKVGVC+ TSGPGATNL+TG+A A DS+P+V +TGQV + L+G DAFQE D +G Sbjct: 66 RVSGKVGVCMATSGPGATNLITGIADALIDSTPLVCITGQVASALLGTDAFQETDVVGFS 125 Query: 119 MPIVKHNFQIQKTCQIPEIFRSAFEIAQTGRPGPVHIDLPKDVQELELDIDKHPIPSKVK 178 MP K N Q++K I F IA++GRPGPV ID+ KD Q D + P + Sbjct: 126 MPGTKWNIQVRKAEDIAPAIAKGFHIARSGRPGPVLIDITKDAQNELADFNYVPC---LG 182 Query: 179 LIGYNPTTIGHPRQIKKAIKLIASAKRPIILAGGGVLLSGANEELLKLVELLNIPVCTTL 238 + Y P +I A ++I +AKRP +L G GV++ A EEL ++ IP TL Sbjct: 183 IRSYRPYPKVKDSEIAAAAEVINAAKRPYLLFGQGVVIGKAEEELKAFLDKTGIPAACTL 242 Query: 239 MGKGCISENHPLALGMVGMHGTKPANYCLSESDVLISIGCRFSDRITGDIKSFATNAKII 298 +G G +SE HP +G +GMHG N ++ DVLI++G RF DR+TGD+K +A AK++ Sbjct: 243 LGSGALSEEHPQFVGKLGMHGNYAPNILTNKCDVLIAVGMRFDDRVTGDLKRYAKQAKVV 302 Query: 299 HIDIDPAEIGKNVNVDVPIVGDAKLILKEVIKQLDYIINKDSKENNDKENISQWIENVNS 358 H+++D AEI KNV +V ++G+ KE + L +NK S + +W+ + Sbjct: 303 HLELDNAEINKNVKCEVSVLGNC----KESLPMLTEKVNKASHD--------EWLAEFRT 350 Query: 359 L-KKSSIPVMDYDDIPIKPQKIVKELMAVIDDLNINKNTIITTDVGQNQMWMAHYFKTQT 417 L +K V+ D +P K + E++ I+D + ++ TDVGQ+QM YFK +T Sbjct: 351 LEEKEKSAVVSLDLLPTKTGLTMGEVIRYINDYK-KDDAVLVTDVGQHQMIAWRYFKFKT 409 Query: 418 PRSFLSSGGLGTMGFGFPSAIGAKVAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVI 477 R+ ++SGGLGTMGF P+A+GA++A + +V+C+ GDGG M QELGTI + PV + Sbjct: 410 TRTQVTSGGLGTMGFSLPAALGAQLADLNRQVVCVVGDGGIQMTVQELGTIMQTRSPVKV 469 Query: 478 CIFDNRTLGMVYQWQNLFYGKRQCSVNFGGAPDFIKLAESYGIKARRIESPNEINEALKE 537 + +N LGMV QWQ LF+ KR PDFIK+AE+Y +KA ++ ++++A+ + Sbjct: 470 VLLNNNFLGMVRQWQQLFFDKRYSFTELDN-PDFIKIAEAYNMKATKVTERGDLSDAVAD 528 Query: 538 AINCDEPYLLDFAID-PSSALSMVPPGAKLTNI 569 + + PY L+ ++ + M+P G + + Sbjct: 529 MLTHEGPYFLEVVVEKEDNVFPMIPTGCSVEEV 561 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 801 Number of extensions: 43 Number of successful extensions: 6 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 599 Length of database: 564 Length adjustment: 36 Effective length of query: 563 Effective length of database: 528 Effective search space: 297264 Effective search space used: 297264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (25.0 bits)
Align candidate Echvi_2056 Echvi_2056 (acetolactate synthase, large subunit, biosynthetic type)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))
../bin/blast/fastacmd -i /tmp/list.32270.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32270.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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