Curated BLAST for Genomes

 

Curated BLAST

Given a genome and a query, find characterized proteins whose descriptions match the query, and then search the genome for homologs of those proteins (example).

Genome database to search:

Example: Azospira


Or upload a genome or proteome in fasta format.

Curated BLAST relies on curated descriptions of over 100,000 experimentally-characterized proteins from Swiss-Prot, BRENDA, CAZy, CharProtDB, MetaCyc, EcoCyc, REBASE, and the Fitness Browser. For details see our preprint or the code.

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by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory