PaperBLAST – Find papers about a protein or its homologs

 

Align WP_108075232.1 to PF02965 (Met_synt_B12)

WP_108075232.1 has 1170 amino acids

Query:       Met_synt_B12  [M=273]
Accession:   PF02965.21
Description: Vitamin B12 dependent methionine synthase, activation domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-52  164.5   0.0    2.9e-52  163.8   0.0    1.2  1  WP_108075232.1  


Domain annotation for each sequence (and alignments):
>> WP_108075232.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  163.8   0.0   2.9e-52   2.9e-52      45     257 ..     964    1169 ..     940    1170 .] 0.90

  Alignments for each domain:
  == domain 1  score: 163.8 bits;  conditional E-value: 2.9e-52
    Met_synt_B12   45 qamLkkiieekllkakavvglfpAnsegddievyadesrseelatlhtLrqqaekeegkpnlclaDfvapkesgv.kDyiGlFavtaglgiee 136 
                       + +k + +  +++akav+++f+A s+g+ ++++ d ++ +  +++++ rq++        lcl+Dfvap ++g+ +D +++F+vtag+gi+e
  WP_108075232.1  964 VESIKGFLRGGRMQAKAVFQFFKAGSDGNRLHLF-DGETGRPSVVFELPRQDK-----PGGLCLSDFVAPLDKGEpRDNLAMFVVTAGQGIRE 1050
                      455667778889*********************8.555566778888888883.....347************9878**************** PP

    Met_synt_B12  137 lakefeaekddYsailvkaladrLaeAfaellhekvrkelWgyakdeklsneelikekYqgiRpApGYpacpdhtekktlfelldaeekigie 229 
                      l +e++a+ +  +   v+ala   aeA ae+lh+++r  +Wg+    +l++ e ++ +Yqg R+++GYpacp  + ++ lf+ l+ e+ ig++
  WP_108075232.1 1051 LSEEYKARGEFLKMHAVQALALETAEAYAEMLHSQLRS-MWGFPDRPDLTMLERFRAEYQGKRYSFGYPACPRLEDQTLLFQALRPED-IGVQ 1141
                      ********9999999**********************7.8***********************************************9.**** PP

    Met_synt_B12  230 LteslamtPaasvsGlyfahpearyFav 257 
                      Lt+ ++m P+asvs+l+f hp+a+yFav
  WP_108075232.1 1142 LTDGCMMEPEASVSALVFHHPQAHYFAV 1169
                      **************************98 PP



Or compare WP_108075232.1 to CDD or PaperBLAST