PaperBLAST – Find papers about a protein or its homologs

 

Align NP_060945.2 to PF01169 (UPF0016)

NP_060945.2 has 324 amino acids

Query:       UPF0016  [M=75]
Accession:   PF01169.19
Description: Uncharacterized protein family UPF0016
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.9e-48  149.0  19.4    1.6e-26   78.8   3.1    2.2  2  NP_060945.2  


Domain annotation for each sequence (and alignments):
>> NP_060945.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   76.1   8.5   1.1e-25   1.1e-25       2      75 .]      99     171 ..      98     171 .. 0.97
   2 !   78.8   3.1   1.6e-26   1.6e-26       2      75 .]     239     312 ..     238     312 .. 0.98

  Alignments for each domain:
  == domain 1  score: 76.1 bits;  conditional E-value: 1.1e-25
      UPF0016   2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                  aa+++i+++ElGDkT+++aa++a+ry+ l+V++Ga+lAl lmt lsvl+G +  +++p+ ++ +v+ vlF++fG
  NP_060945.2  99 AAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFG 171
                  799***********************************************777.89*****************9 PP

  == domain 2  score: 78.8 bits;  conditional E-value: 1.6e-26
      UPF0016   2 aaflliflaElGDkTqlaaalLaarykplpVflGavlAlalmtvlsvllGsslakrlperlielvaavlFllfG 75 
                  +a++l+flaE+GD++ql++++Laar +p++V +G ++++ l+t+l+v+ G+++a++++ r+++++++++Fl+f+
  NP_060945.2 239 QALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFA 312
                  899*********************************************************************97 PP



Or compare NP_060945.2 to CDD or PaperBLAST