PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5491764 to PF01169 (UPF0016)

VIMSS5491764 has 189 amino acids

Query:       UPF0016  [M=75]
Accession:   PF01169.23
Description: Uncharacterized protein family UPF0016
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-45  140.0  16.0    1.7e-25   75.6   5.4    2.1  2  VIMSS5491764  


Domain annotation for each sequence (and alignments):
>> VIMSS5491764  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.5   2.8   6.4e-24   6.4e-24       3      75 .]      11      84 ..       9      84 .. 0.97
   2 !   75.6   5.4   1.7e-25   1.7e-25       2      75 .]     107     182 ..     106     182 .. 0.95

  Alignments for each domain:
  == domain 1  score: 70.5 bits;  conditional E-value: 6.4e-24
       UPF0016  3 sflliflaElGDkTqlatiaLAary.kplaVflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75
                  s+++++laE+GDkTql+ ++LA+ry kp++++++++ A++l++ la++lG ++a++l ++++k++  ++F++++
  VIMSS5491764 11 SITTVALAEIGDKTQLLSLLLASRYrKPIPIIAAIFFATLLNHTLAAYLGVVVADYLTPETLKWALIISFVIMA 84
                  7899*******************************************************************997 PP

  == domain 2  score: 75.6 bits;  conditional E-value: 1.7e-25
       UPF0016   2 tsflliflaElGDkTqlatiaLAary.kpla.VflGatlAlalatllavllGsllakrlperlvklvaavlFlvfG 75 
                   +sf+++f+aE+GDkTq+at +L+a++ ++l+ V+lG+t++++la+++ vl+G++ a++lp +l+++v+av+Fl+++
  VIMSS5491764 107 ASFIAFFIAEIGDKTQIATSILGAQNaDALSwVILGTTIGMLLANVPVVLIGKFSADKLPLTLIHRVTAVIFLGLA 182
                   79************************966656*****************************************976 PP



Or compare VIMSS5491764 to CDD or PaperBLAST