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Align NP_001026882.2 to PF01170 (UPF0020)

NP_001026882.2 has 463 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.6e-16   45.2   0.0      1e-15   44.1   0.0    1.5  1  NP_001026882.2  


Domain annotation for each sequence (and alignments):
>> NP_001026882.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.1   0.0     1e-15     1e-15       3     140 ..     190     320 ..     189     326 .. 0.85

  Alignments for each domain:
  == domain 1  score: 44.1 bits;  conditional E-value: 1e-15
                     SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHH CS
         UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNae 97 
                     +R+f g++++ + L+  + +  ++k+++  +DP+ G+G++lI  a  ga+++     +  ++  + + +++r+++k +g D +       r N++
  NP_001026882.2 190 KRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYVY---GTDIDYNTVHGLGKATRKNQKWRGPDENI------RANLR 275
                     79**************************************************...56678888888999999999******876......57999 PP

                     HTT-GGG.EEEEE--GGG--.STTS---EEEE----------HHH CS
         UPF0020  98 kagvgdl.iefsqadaakLr.lkegevdvivtnpPYGerlgskka 140
                     ++g+++   ++ + da k   +k   +d+i+t+pPYG+r ++ ++
  NP_001026882.2 276 QYGLEKYyLDVLVSDASKPSwRKGTYFDAIITDPPYGIRESTRRT 320
                     99999852455666666655435559*************888765 PP



Or compare NP_001026882.2 to CDD or PaperBLAST