PaperBLAST – Find papers about a protein or its homologs

 

Align NP_415468.1 to PF01170 (UPF0020)

NP_415468.1 has 702 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    9.2e-73  230.2   0.0    3.1e-68  215.5   0.0    2.3  2  NP_415468.1  


Domain annotation for each sequence (and alignments):
>> NP_415468.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  215.5   0.0   3.1e-68   3.1e-68       1     196 [.     162     375 ..     162     376 .. 0.97
   2 !   12.6   0.0   4.5e-06   4.5e-06      79     169 ..     564     657 ..     532     668 .. 0.83

  Alignments for each domain:
  == domain 1  score: 215.5 bits;  conditional E-value: 3.1e-68
      UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk..ly 80 
                  RgyR+ +g ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++             +kaea+++ar   ae++  +y
  NP_415468.1 162 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFY 259
                  9**************************************************************************999999999999888566577** PP

      UPF0020  81 gsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekal 176
                  gsD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+  l++g ++++++npPYGerl+s++al +L+s ++r +k+++ g  ++++l++++ +l ++l
  NP_415468.1 260 GSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCL 355
                  ************************************999***************************************99..**************** PP

      UPF0020 177 eeralrkvkeknvklglllk 196
                  + ra +++k+kn++l++++k
  NP_415468.1 356 QLRADKQYKAKNGPLDCVQK 375
                  *****************997 PP

  == domain 2  score: 12.6 bits;  conditional E-value: 4.5e-06
      UPF0020  79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaen 169
                     +D+ r +++ a++N++  g++++ + + qad  a Lr++++++d+i  +pP     +r++++ ++++ + ++++ lkr lr gg   +++++n
  NP_415468.1 564 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657
                  5679******************9988653677776256889999**********6444689999999*****************944..4444444 PP



Or compare NP_415468.1 to CDD or PaperBLAST