NP_415468.1 has 702 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 9.2e-73 230.2 0.0 3.1e-68 215.5 0.0 2.3 2 NP_415468.1 Domain annotation for each sequence (and alignments): >> NP_415468.1 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 215.5 0.0 3.1e-68 3.1e-68 1 196 [. 162 375 .. 162 376 .. 0.97 2 ! 12.6 0.0 4.5e-06 4.5e-06 79 169 .. 564 657 .. 532 668 .. 0.83 Alignments for each domain: == domain 1 score: 215.5 bits; conditional E-value: 3.1e-68 UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk..ly 80 RgyR+ +g ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++ +kaea+++ar ae++ +y NP_415468.1 162 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFY 259 9**************************************************************************999999999999888566577** PP UPF0020 81 gsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekal 176 gsD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+ l++g ++++++npPYGerl+s++al +L+s ++r +k+++ g ++++l++++ +l ++l NP_415468.1 260 GSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCL 355 ************************************999***************************************99..**************** PP UPF0020 177 eeralrkvkeknvklglllk 196 + ra +++k+kn++l++++k NP_415468.1 356 QLRADKQYKAKNGPLDCVQK 375 *****************997 PP == domain 2 score: 12.6 bits; conditional E-value: 4.5e-06 UPF0020 79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaen 169 +D+ r +++ a++N++ g++++ + + qad a Lr++++++d+i +pP +r++++ ++++ + ++++ lkr lr gg +++++n NP_415468.1 564 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657 5679******************9988653677776256889999**********6444689999999*****************944..4444444 PP
Or compare NP_415468.1 to CDD or PaperBLAST