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Align P45253 to PF01170 (UPF0020)

P45253 has 292 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.7e-11   28.4   0.0    1.8e-10   26.9   0.0    1.7  2  P45253    


Domain annotation for each sequence (and alignments):
>> P45253  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.9   0.0   1.8e-10   1.8e-10      72     135 ..     146     205 ..     101     214 .. 0.75
   2 ?   -3.4   0.0      0.36      0.36      49     185 ..     256     274 ..     246     284 .. 0.48

  Alignments for each domain:
  == domain 1  score: 26.9 bits;  conditional E-value: 1.8e-10
              HHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE-------- CS
  UPF0020  72 earaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerl 135
              + +  l+++g+Dl + vv+ a++Nae+ +++ +  +s + + +++   g++d+iv+npPY ++ 
   P45253 146 KRHIPLEIIGVDLMSDVVALAQSNAERNQLNVEFLQSRW-FDNIT---GKFDLIVSNPPYIDAQ 205
              2334566***********************999888886.56677...88**********7765 PP

  == domain 2  score: -3.4 bits;  conditional E-value: 0.36
              HHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHH CS
  UPF0020  49 lganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflr 150
              ++ + +                                                                                                
   P45253 256 QQGEKV------------------------------------------------------------------------------------------------ 261
              433333................................................................................................ PP

              HHHHH-TT..-EEEEEESSHHHHHCC---ESEEEE CS
  UPF0020 151 elkrvlrgggrlvlltsenkalekaleeralrkvk 185
                                     ++++e+++++v+
   P45253 262 ----------------------RSIFQENHWEMVE 274
              ......................3333444444433 PP



Or compare P45253 to CDD or PaperBLAST