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Align Q0I4C6 to PF01170 (UPF0020)

Q0I4C6 has 718 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      6e-73  230.8   0.0    2.1e-70  222.5   0.0    2.3  2  Q0I4C6    


Domain annotation for each sequence (and alignments):
>> Q0I4C6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  222.5   0.0   2.1e-70   2.1e-70       1     196 [.     162     375 ..     162     376 .. 0.94
   2 !    6.1   0.0   0.00045   0.00045      79     164 ..     579     669 ..     551     688 .. 0.80

  Alignments for each domain:
  == domain 1  score: 222.5 bits;  conditional E-value: 2.1e-70
  UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear....aelk..lygsD 83 
              RgyR+++g+apL+etLAaa+v ++ w++g+pl+DPmCGsGt+lIEaa+++a+iap+l+r ++++             +k+ea e a+    ++l   ++g+D
   Q0I4C6 162 RGYREDTGKAPLRETLAAAIVLRSSWEKGTPLVDPMCGSGTLLIEAAQMEAQIAPQLHRLHWGFdfwkghnqvvwekVKQEAVELAEqafnRKLTphFWGFD 263
              9**************************************************************************9977766655554554444469***** PP

  UPF0020  84 ldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkv 184
              ld+rv+++a++Na++agv++li+++q d+a L+  +e+e++++++npPYGerlg+++al +LYs f+r+lk +++   ++v++++++ al ++l+ ra r++
   Q0I4C6 264 LDHRVLKKAQKNAQNAGVSHLIKWQQGDVAGLKnPTEQEIGTVICNPPYGERLGTTPALIALYSVFGRQLKTEFAD--WNVSIFSGEPALLDCLRLRAYRQF 363
              *********************************65666**************************************..************************ PP

  UPF0020 185 keknvklglllk 196
              k+kn++l++++k
   Q0I4C6 364 KAKNGPLDCVQK 375
              *********997 PP

  == domain 2  score: 6.1 bits;  conditional E-value: 0.00045
  UPF0020  79 lygsDldrrvvqgareNaekagvgdl.iefsqadaak.LrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvl 164
                 +D+ + +++ a++N+    ++++  ++ qad  + L++ + ++d+i  +pP     +r+++  ++++ + +++  lkr+lr++g +v+
   Q0I4C6 579 TTTVDMSNTYLNWAEQNLLLNDIEGKqHKLIQADCLQwLNKCDRQFDLIFVDPPtfsNSKRMEDSWDVQRDHIKLMANLKRILRTNGTIVF 669
              677999999999999999999998761567888876625577779*********53336899999999999999***********777665 PP



Or compare Q0I4C6 to CDD or PaperBLAST