PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::BcgI to PF01170 (UPF0020)

REBASE::BcgI has 637 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-11   30.8   0.1    2.4e-11   29.8   0.1    1.4  1  REBASE::BcgI  


Domain annotation for each sequence (and alignments):
>> REBASE::BcgI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.8   0.1   2.4e-11   2.4e-11      17     188 ..     334     495 ..     330     503 .. 0.71

  Alignments for each domain:
  == domain 1  score: 29.8 bits;  conditional E-value: 2.4e-11
                   HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHHTT..-GGGEEEEE CS
       UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear..aelklygsDldrrvvqgareNaekag..vgdliefsq 109
                    + + +l g+++ +  lDP CG+G++lI a       a             e   e r  ++ +lyg+++++++ + a +N    g   ++li  ++
  REBASE::BcgI 334 TSLMAELIGINKSDFVLDPACGTGAFLISAMNRMLGQA-------------ENDDERRdiKQNRLYGIEIQQKLFTIATTNMILRGdgKSNLIRDNC 417
                   567889999*******************9865444444.............2223333224445*****************7665500555555555 PP

                   --GGG--STTS.---EEEE----------HHHH.HHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEEEEE CS
       UPF0020 110 adaakLrlkeg.evdvivtnpPYGerlgskkal.ekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvkekn 188
                   + + +   ++g  ++ i+ npPY ++ +++ +   +L  +f +++ ++l  gg+l+++++++ ++ k  +++a +k  +k+
  REBASE::BcgI 418 LTFDNTI-MNGyGINKILMNPPYSQAKNDQTQHlSEL--SFIQQALEMLVVGGKLCAIVPQSTMVGKNRHDKARKKQILKQ 495
                   5555444.56547889*******99876655442666..6777777778888********999998887777766666655 PP



Or compare REBASE::BcgI to CDD or PaperBLAST