REBASE::M.Aap10433I has 515 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-10 27.5 0.0 2.7e-10 26.4 0.0 1.5 1 REBASE::M.Aap10433I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Aap10433I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.4 0.0 2.7e-10 2.7e-10 18 173 .. 170 331 .. 166 344 .. 0.81
Alignments for each domain:
== domain 1 score: 26.4 bits; conditional E-value: 2.7e-10
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+vr + ++ e+++DP G+ ++lI a + ++ g + + +e e++++ + ++g++l ++ + a N +++ +
REBASE::M.Aap10433I 170 NTMVRCIKPQPKETIQDPAAGTAGFLIAADQYMRKQT-GDYMDISFE-----EQQFQSKHAFVGVELVPNTRRLALMNCLLHDIEGGPQG 253
5799***********************9988888888.555343333.....455567777*****************999999999888 PP
UPF0020 108 sqadaakLr...lkegevdvivtnpPYGerlgskkal..ekLYs.......eflrelkrvlrgggrlvlltaenkale 173
+++ L ++ ++ d+i++npP+G + g a+ ++L+ +fl+ + r+l++ggr+++++++n +e
REBASE::M.Aap10433I 254 AVLQGNTLGetgKRLKSADIILANPPFGTSKGGDAAItrDDLTYettnkqlAFLQHIYRNLKEGGRAAVVLPDNVLFE 331
88888888766645559*************99988886677864122233358899999***********99998887 PP
Or compare REBASE::M.Aap10433I to CDD or PaperBLAST