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Align REBASE::M.ApaHSI to PF01170 (UPF0020)

REBASE::M.ApaHSI has 796 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    4.4e-17   48.6   1.5    7.3e-17   47.8   0.0    2.0  2  REBASE::M.ApaHSI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.ApaHSI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.8   0.0   7.3e-17   7.3e-17      20     158 ..     328     505 ..     322     511 .. 0.83
   2 ?   -2.5   0.5      0.19      0.19      63     103 ..     661     701 ..     628     719 .. 0.56

  Alignments for each domain:
  == domain 1  score: 47.8 bits;  conditional E-value: 7.3e-17
                       HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS..................................HHHHHHHHHH.... CS
           UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle..................................lkaeaeeear.... 74 
                       + ++ + ++ge + DP CGsG++lI a   +++ +   +re++ +                                      + ++a     
  REBASE::M.ApaHSI 328 MTEIIDPQEGEIICDPTCGSGGFLIKAFEYVREKIEADIREQKEKlrsefesddfeskpedeqirvtvlidkmqavlnaE---LDTSATnsrm 417
                       7788899**************************99999999999999***************************995542...4433333334 PP

                       HH--...EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT CS
           UPF0020  75 aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
                       ++l+   +yg D ++r+ ++++ N    g g+          +++   e+ +dvi+tnpP+G+ +++ +++ +  + + +e+k+ +r+
  REBASE::M.ApaHSI 418 QQLSrncIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDGLLNVNgIFEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRN 505
                       3333678*****************998887766555554555666655668*******************999999999999998887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.19
                       SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GG CS
           UPF0020  63 lelkaeaeeearaelklygsDldrrvvqgareNaekagvgd 103
                         +++++++++++++k   ++ + +++q+ ++  +  + + 
  REBASE::M.ApaHSI 661 KDARSRLKQAKKDKAKTSSINAEINAIQQEQTDNKTKKKEV 701
                       44555555555555555555555555555444444444444 PP



Or compare REBASE::M.ApaHSI to CDD or PaperBLAST