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Align REBASE::M.ApaHSI to PF01170 (UPF0020)

REBASE::M.ApaHSI has 796 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    4.1e-17   48.6   1.6    6.7e-17   47.9   0.0    2.1  2  REBASE::M.ApaHSI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.ApaHSI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   47.9   0.0   6.7e-17   6.7e-17      20     158 ..     328     505 ..     322     511 .. 0.83
   2 ?   -2.5   0.6      0.19      0.19      59     107 ..     657     705 ..     630     719 .. 0.58

  Alignments for each domain:
  == domain 1  score: 47.9 bits;  conditional E-value: 6.7e-17
           UPF0020  20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..................................lkaeaeeear.... 74 
                       + ++ + ++ge + DP CGsG++lI a   +++ +   +re++ +                                      + ++a     
  REBASE::M.ApaHSI 328 MTEIIDPQEGEIICDPTCGSGGFLIKAFEYVREKIEADIREQKEKlrsefesddfeskpedeqirvtvlidkmqavlnaE---LDTSATnsrm 417
                       7788899****************************999*99999999***************************995542...3333333334 PP

           UPF0020  75 aelk...lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
                       ++l+   +yg D ++r+ ++++ N    g g+          +++   e+ +dvi+tnpP+G+ +++ +++ +  + + +e+k+ +r+
  REBASE::M.ApaHSI 418 QQLSrncIYGTDANPRMARTSKMNMIMHGDGHGGVHHHDGLLNVNgIFEERFDVILTNPPFGQNVDRSQTITDADRFTDEEMKKKYRN 505
                       3333678*****************998887765555444555566655668********************99999999999998887 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.19
           UPF0020  59 refvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                       ++    +++++++++++++k   ++   +++q+ ++  +  + + + ++
  REBASE::M.ApaHSI 657 KDDLKDARSRLKQAKKDKAKTSSINAEINAIQQEQTDNKTKKKEVEKTL 705
                       4444445556666666666655555555555555555555444444444 PP



Or compare REBASE::M.ApaHSI to CDD or PaperBLAST