PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.AspNIH3II to PF01170 (UPF0020)

REBASE::M.AspNIH3II has 495 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.8e-12   33.5   0.0    3.7e-12   32.5   0.0    1.5  1  REBASE::M.AspNIH3II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.AspNIH3II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.5   0.0   3.7e-12   3.7e-12      18     133 ..     173     279 ..     169     335 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.5 bits;  conditional E-value: 3.7e-12
                          HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlie 106
                          + +v++ + k ge+++DP CG+G++l  a   +++ +             e  ++ +  ++++ g+++++     + +N    g++  ++
  REBASE::M.AspNIH3II 173 RFMVNRIDPKLGERIMDPACGTGGFLACAFDHVKEHY------------VETSADHQtLQQQILGVEKKQLPHLLCTTNMLLHGIEVPVQ 250
                          679***********************55444444444............3444455535566********99999*************** PP

                          EEE--GGG--..STTS---EEEE------ CS
              UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGe 133
                          ++  +  + +    ++++dvi+tnpP+G 
  REBASE::M.AspNIH3II 251 IRHGNTLDKPlsSWDSDIDVILTNPPFGG 279
                          ***99987664466679**********95 PP



Or compare REBASE::M.AspNIH3II to CDD or PaperBLAST