REBASE::M.AspNIH5II has 495 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-13 34.4 0.0 2e-12 33.3 0.0 1.6 1 REBASE::M.AspNIH5II
Domain annotation for each sequence (and alignments):
>> REBASE::M.AspNIH5II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.0 2e-12 2e-12 18 134 .. 173 280 .. 169 337 .. 0.75
Alignments for each domain:
== domain 1 score: 33.3 bits; conditional E-value: 2e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlie 106
+ +v++ + k ge+++DP CG+G++l a +++ + e ++ + ++++ g+++++ + +N g++ ++
REBASE::M.AspNIH5II 173 RFMVNRIDPKLGERIMDPACGTGGFLACAFDHVKEHY------------VETSNDHQtLQQQILGVEKKQLPHLLCTTNMLLHGIEVPVQ 250
679***********************55444444444............2333344425666********99999*************** PP
UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGer 134
++ + + + ++++dvi+tnpP+G
REBASE::M.AspNIH5II 251 IRHGNTLDKPlsSWDSDIDVILTNPPFGGT 280
***99987664466679***********64 PP
Or compare REBASE::M.AspNIH5II to CDD or PaperBLAST