PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Axy10807I to PF01170 (UPF0020)

REBASE::M.Axy10807I has 554 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    2.9e-17   49.1   0.0    4.7e-17   48.4   0.0    1.3  1  REBASE::M.Axy10807I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Axy10807I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   48.4   0.0   4.7e-17   4.7e-17      20     166 ..     201     366 ..     196     393 .. 0.80

  Alignments for each domain:
  == domain 1  score: 48.4 bits;  conditional E-value: 4.7e-17
              UPF0020  20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNae 97 
                          + +l + + g++++DP CG+G++l+ a +   +  +++  ++  e          + a + e+a+a l+  lyg D+d+ +v+ +  N+ 
  REBASE::M.Axy10807I 201 MAELVQPQLGHKIADPACGTGGFLLGAYQYIVTQLAIKAGTKNLEpdedgffrtsIAAALTEKAQAILQesLYGYDIDATMVRLGLMNLM 290
                          677888999******************99888888777766666699****98885556666666555567******************* PP

              UPF0020  98 kagvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvllt 166
                            g+++  i++++   ++ + +e+e+d++++npP+  ++++   +e+L  +       f + + r l++gg +++++
  REBASE::M.Axy10807I 291 MHGIDEpHIDYQDTLSKSYN-EEAEYDIVLANPPFTGSIDKGDINENLQLSttktellFVENIYRLLKKGGTACVIV 366
                          ****9835999999999999.888*****************999999865411122224455666666666666665 PP



Or compare REBASE::M.Axy10807I to CDD or PaperBLAST