REBASE::M.Bce13417IV has 929 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.7e-22 64.0 0.0 2.3e-11 29.9 0.0 4.3 4 REBASE::M.Bce13417IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.Bce13417IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 12.8 0.0 4e-06 4e-06 28 55 .. 86 113 .. 67 145 .. 0.79
2 ! 14.4 0.0 1.3e-06 1.3e-06 94 136 .. 254 298 .. 244 304 .. 0.77
3 ! 29.9 0.0 2.3e-11 2.3e-11 10 51 .. 519 560 .. 514 586 .. 0.88
4 ? 0.6 0.0 0.021 0.021 102 133 .. 723 752 .. 707 756 .. 0.78
Alignments for each domain:
== domain 1 score: 12.8 bits; conditional E-value: 4e-06
UPF0020 28 dgepllDPmCGsGtilIEaallganiap 55
+ge +DP+ GsGt ++Ea lg++++
REBASE::M.Bce13417IV 86 RGELVFDPFGGSGTTALEAIRLGRRAVS 113
688899*************999998874 PP
== domain 2 score: 14.4 bits; conditional E-value: 1.3e-06
UPF0020 94 eNaekagvgdliefsqadaakLr...lkegevdvivtnpPYGerlg 136
+Na +++ g + f + d+++++ l++g+vd+ivt pPYG++++
REBASE::M.Bce13417IV 254 KNAAATRYGVSY-FLTGDVRAIPedgLPDGSVDLIVTSPPYGNAMD 298
566555555554.55669999998888999************9987 PP
== domain 3 score: 29.9 bits; conditional E-value: 2.3e-11
UPF0020 10 apLketLAaalvrlagwkdgepllDPmCGsGtilIEaallga 51
++ ++LA al++ ++ g+++lDP+CGsGt l+E+ l g
REBASE::M.Bce13417IV 519 GKFYPQLAKALINQRSLTHGSRILDPFCGSGTTLLEGYLNGY 560
667799******************************977665 PP
== domain 4 score: 0.6 bits; conditional E-value: 0.021
UPF0020 102 gdliefsqadaakLrlkegevdvivtnpPYGe 133
gd + + da L+ g +d+++t pPY
REBASE::M.Bce13417IV 723 GDNRIAATYDALGLE--AGTIDMVLTSPPYAM 752
555556667888888..5579*********76 PP
Or compare REBASE::M.Bce13417IV to CDD or PaperBLAST