PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.BceM3I to PF01170 (UPF0020)

REBASE::M.BceM3I has 476 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    2.5e-11   29.8   0.0      5e-11   28.8   0.0    1.5  1  REBASE::M.BceM3I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.BceM3I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.8   0.0     5e-11     5e-11      19     148 ..     153     276 ..     149     317 .. 0.88

  Alignments for each domain:
  == domain 1  score: 28.8 bits;  conditional E-value: 5e-11
                       HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE-- CS
           UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqad 111
                       ++v+l + kpge+  DP  G+ ++ I a +  +n          ++ ++   +e++++  + g++l ++  + a  Na    ++++ e+ +  
  REBASE::M.BceM3I 153 VMVQLVDPKPGERCNDPAAGTFGFMIAADQYLKNKT------DDYFDLDPQDAEFQKKEAFTGMELVKETHRLALMNALLHDMEGRLEQGDTL 239
                       7*************************9988888888......567789999999999999******************************999 PP

                       GGG--STTS---EEEE----------HHHH.HHHHHHH CS
           UPF0020 112 aakLrlkegevdvivtnpPYGerlgskkal.ekLYsef 148
                         + + ++ ++dvi+tnpP+G + g ++a  ++L+ e+
  REBASE::M.BceM3I 240 SSNGKWMK-NFDVILTNPPFGTKKGGERATrDDLTFET 276
                       99988555.7************9999998866776555 PP



Or compare REBASE::M.BceM3I to CDD or PaperBLAST