REBASE::M.BmeD34I has 476 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-10 27.0 0.0 3.6e-10 26.0 0.0 1.5 1 REBASE::M.BmeD34I
Domain annotation for each sequence (and alignments):
>> REBASE::M.BmeD34I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.0 0.0 3.6e-10 3.6e-10 19 145 .. 153 273 .. 149 326 .. 0.82
Alignments for each domain:
== domain 1 score: 26.0 bits; conditional E-value: 3.6e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
++v+l + k ge+ +DP G+ ++ I a + +n y+ + e+e++++ ++g++l + + a Na +++++ e+ +
REBASE::M.BmeD34I 153 VMVQLIDPKIGERCADPAAGTFGFMIAADQYLKNQT------DDYFDIEPQEAEFQKKEAFVGMELVKDTHRLALMNALLHNIEGRLEQGDT 238
79************************9998888888......455666667777778888*****************************999 PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal.ekLY 145
+ + ++ ++dvi+tnpP+G + g ++ ++L+
REBASE::M.BmeD34I 239 LSGNGKWMK-NFDVILTNPPFGTKKGGERVSrDDLT 273
988888555.7***********98776665435665 PP
Or compare REBASE::M.BmeD34I to CDD or PaperBLAST