REBASE::M.BspLA1I has 566 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-16 46.3 0.0 3.6e-16 45.5 0.0 1.3 1 REBASE::M.BspLA1I
Domain annotation for each sequence (and alignments):
>> REBASE::M.BspLA1I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 45.5 0.0 3.6e-16 3.6e-16 20 165 .. 215 379 .. 210 388 .. 0.75
Alignments for each domain:
== domain 1 score: 45.5 bits; conditional E-value: 3.6e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNaeka 99
+ +l + + g++++DP CGsG++l+ a + + +++ ++ + a + e+a+a l l+g D+d+ +v+ + N+
REBASE::M.BspLA1I 215 MAELVQPQLGHKIADPACGSGGFLLGAYQYIVTQLAIKAGSTNLTpdedgfvrtsVAAALTEKAQAILAssLWGYDIDSTMVRLGLMNLMMH 306
677888999*****************9988877775555444444899***77664445555555333357********************* PP
UPF0020 100 gvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvll 165
g+++ i++++ ++ +e+e+d++ +npP+ ++++ +e+L + f + + r l++gg ++++
REBASE::M.BspLA1I 307 GIDEpHIDYKDTLSKSYI-EEAEYDIVMANPPFTGSIDKGDINENLQLAttktellFVENIYRLLKKGGTACVI 379
**9835899998888877.888*****************99999997551112222344555556666666655 PP
Or compare REBASE::M.BspLA1I to CDD or PaperBLAST