REBASE::M.Cbo67071II has 486 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 6.6e-12 31.6 0.0 1.9e-11 30.1 0.0 1.8 2 REBASE::M.Cbo67071II Domain annotation for each sequence (and alignments): >> REBASE::M.Cbo67071II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -3.4 0.0 0.35 0.35 142 164 .. 81 103 .. 76 121 .. 0.68 2 ! 30.1 0.0 1.9e-11 1.9e-11 18 141 .. 166 282 .. 162 324 .. 0.84 Alignments for each domain: == domain 1 score: -3.4 bits; conditional E-value: 0.35 UPF0020 142 ekLYseflrelkrvlrgggrlvl 164 ++ Y+ +l+e+ ++++g+ r ++ REBASE::M.Cbo67071II 81 KRYYNTILDEFGENCKGRVREIY 103 56688888888888887555444 PP == domain 2 score: 30.1 bits; conditional E-value: 1.9e-11 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106 ++v+l + k+ge DP CG+ ++ I a ++ ++++ e+e++++ + g +l + + a Na ++++i REBASE::M.Cbo67071II 166 NVMVKLVDPKPGELCNDPACGTFGFMIAADKHIKENTD------DLFALEFDEQEFQKKKAFTGCELVHDTHRLALMNAMLHDIEGEII 248 58*************************88665555553......34466666667777888**************************** PP UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkal 141 + + ++ ++ + +dv++tnpP+G + g ++a REBASE::M.Cbo67071II 249 LGDTL-SNVGKSMKGFDVVLTNPPFGTKKGGERAT 282 ***55.556656668***********999988887 PP
Or compare REBASE::M.Cbo67071II to CDD or PaperBLAST