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Align REBASE::M.Cbr290I to PF01170 (UPF0020)

REBASE::M.Cbr290I has 544 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    4.2e-12   32.3   0.1    3.1e-11   29.5   0.0    2.3  2  REBASE::M.Cbr290I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cbr290I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.4   0.0     0.085     0.085      65      88 ..      40      63 ..      11      69 .. 0.77
   2 !   29.5   0.0   3.1e-11   3.1e-11      18     140 ..     172     318 ..     167     342 .. 0.73

  Alignments for each domain:
  == domain 1  score: -1.4 bits;  conditional E-value: 0.085
                       HHHHHHHHHHHH--EEEEES-HHH CS
            UPF0020 65 lkaeaeeearaelklygsDldrrv 88
                       ++++ e++ +++ +++g+D+++r 
  REBASE::M.Cbr290I 40 MLDTQEQRDEKRKQIAGIDFKPRF 63
                       67777888889999*****99886 PP

  == domain 2  score: 29.5 bits;  conditional E-value: 3.1e-11
                        HHHHHHTT--..TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS..............HHHHHHHHHHHH--EEEEES-HHHHH CS
            UPF0020  18 aalvrlagwk..pgepllDPmCGsGtilI...Eaallganiapgllrefvle..............lkaeaeeearaelklygsDldrrvvq 90 
                        +a+v++ + +  +ge++ DP CG+G++l    E  l + +     + e  ++              l++ ++e+  ++  + g D+d  +++
  REBASE::M.Cbr290I 172 RAMVEMMEPNpaRGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWREHV-DNNMFHGYDFDTTMLR 262
                        78988876651179*************953324445555555444434333366667677666665444444433.34449*********** PP

                        HHHHHHHHTT-GGG.EEEEE--GGG--.....STTS---EEEE----------HHH CS
            UPF0020  91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
                         a  N+   gv+   i++++   +++      ++++ +++i++npP+  +l+++  
  REBASE::M.Cbr290I 263 IAAMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
                        ***********97549999888877776776877889***********99998865 PP



Or compare REBASE::M.Cbr290I to CDD or PaperBLAST