REBASE::M.Cbr290I has 544 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 3.7e-12 32.4 0.0 2.8e-11 29.6 0.0 2.3 2 REBASE::M.Cbr290I Domain annotation for each sequence (and alignments): >> REBASE::M.Cbr290I # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.2 0.0 0.078 0.078 65 88 .. 40 63 .. 12 69 .. 0.77 2 ! 29.6 0.0 2.8e-11 2.8e-11 18 140 .. 172 318 .. 167 344 .. 0.73 Alignments for each domain: == domain 1 score: -1.2 bits; conditional E-value: 0.078 UPF0020 65 lkaeaeeearaelklygsDldrrv 88 ++++ e++ +++ +++g+D+++r REBASE::M.Cbr290I 40 MLDTQEQRDEKRKQIAGIDFKPRF 63 67777888889999*****99886 PP == domain 2 score: 29.6 bits; conditional E-value: 2.8e-11 UPF0020 18 aalvrlagwk..dgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvq 90 +a+v++ + + +ge++ DP CG+G++l E l + + + e ++ l++ ++e+ ++ + g D+d +++ REBASE::M.Cbr290I 172 RAMVEMMEPNpaRGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWREHV-DNNMFHGYDFDTTMLR 262 78998887651179*************952324445554444444433333366667677776665554444443.34449*********** PP UPF0020 91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140 a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++ REBASE::M.Cbr290I 263 IAAMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318 ***********97549998888877776666877889***********99998765 PP
Or compare REBASE::M.Cbr290I to CDD or PaperBLAST