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Align REBASE::M.Cco14983I to PF01170 (UPF0020)

REBASE::M.Cco14983I has 495 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.2e-12   34.0   0.0    3.2e-12   32.6   0.0    1.7  1  REBASE::M.Cco14983I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cco14983I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.6   0.0   3.2e-12   3.2e-12      17     193 ..     183     365 ..     180     368 .. 0.69

  Alignments for each domain:
  == domain 1  score: 32.6 bits;  conditional E-value: 3.2e-12
                          HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHH..HHHTT-GG CS
              UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareN..aekagvgd 103
                           +a+v++ + k+ e+++DP CGs ++l+E  l   +      r++  ++   +ee +  ++  l+g ++ +   + +  N  +++ +  +
  REBASE::M.Cco14983I 183 IRAMVEVIDPKAKERIYDPACGSCGFLVESFLHILYED----RNKNKKANLSVEELEFlQNDALFGKEKTPLSYAMGVMNmiLHEVKSPN 268
                          58****************************99888777....444444445555544435555999999999999998883335555567 PP

                          GEEEEE-..-GGG--STTS---EEEE----------HHHH......HHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEE CS
              UPF0020 104 liefsqa..daakLrlkegevdvivtnpPYGerlgskkal......ekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvk 185
                          +i+ +++  ++++++ ++++++vi++npP+G + +++ ++      ++    fl+ + + l+++gr +++++e   +++  +  +++k  
  REBASE::M.Cco14983I 269 IIKTNTLnkKITDIT-QSEKYEVILANPPFGGKEKEQIQNnfpvksNATELLFLQHILKSLNNNGRCAIIVPEGVLFQNSNAFVSVKKDL 357
                          777776411567777.7779***********77655543311111122233477777788888888888888887777766666666666 PP

                          EEETTEEE CS
              UPF0020 186 eknvklgl 193
                          ++n +l++
  REBASE::M.Cco14983I 358 LENFNLEC 365
                          66666666 PP



Or compare REBASE::M.Cco14983I to CDD or PaperBLAST