PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Ces8809I to PF01170 (UPF0020)

REBASE::M.Ces8809I has 584 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.4e-10   26.5   0.0    4.2e-10   25.8   0.0    1.3  1  REBASE::M.Ces8809I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Ces8809I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   25.8   0.0   4.2e-10   4.2e-10      31     132 ..      88     193 ..      84     227 .. 0.79

  Alignments for each domain:
  == domain 1  score: 25.8 bits;  conditional E-value: 4.2e-10
                         -EEETT-TTSHHHHHHHHHHTT--TTTT----SS......HHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GG CS
             UPF0020  31 pllDPmCGsGtilIEaallganiapgllrefvle......lkaeaeeear..aelklygsDldrrvvqgareNaekagvgdliefsqadaa 113
                         +++DP CG+G ilI      +n +    +++ ++      lk ++++      +++l+g+D+d  +++     +     g ++e    +  
  REBASE::M.Ces8809I  88 KIVDPSCGTGNILICCFKFLQNLY----KDNLSFineangLKLNVKNIDDhiIRYNLFGFDIDDIALKILVIDLYDLSKGIIVENIFNKDF 174
                         69************9888888888....5555555568887777776666457888**************999999998888876654444 PP

                         G--STTS---EEEE----- CS
             UPF0020 114 kLrlkegevdvivtnpPYG 132
                          L ++e ++d++++npPY 
  REBASE::M.Ces8809I 175 LLYENECKYDIVIGNPPYV 193
                         4667888***********3 PP



Or compare REBASE::M.Ces8809I to CDD or PaperBLAST