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Align REBASE::M.Ces8809II to PF01170 (UPF0020)

REBASE::M.Ces8809II has 499 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.6e-14   40.2   0.0      3e-14   39.3   0.0    1.4  1  REBASE::M.Ces8809II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Ces8809II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   0.0     3e-14     3e-14      18     145 ..     166     303 ..     161     361 .. 0.74

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3e-14
                          HHHHHHTT--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SS.............HHHHHHHHHH....HH--EEEEES-HH CS
              UPF0020  18 aalvrlagwkpgepllDPmCGsGtilI...Eaallganiapgllrefvle.............lkaeaeeear....aelklygsDldrr 87 
                          + +v+l + + ++++ DP CG+ ++lI   E  l + + +         +             + +      +    ++  +y++D+d++
  REBASE::M.Ces8809II 166 RMMVELMNPTLEDKICDPACGTAGFLInslEYILEKYTKPESI------FtdeegnfhsrigdMMTSK----EweyfRTDMFYAFDFDPS 245
                          679***********************93333344444444444......3344555777654322211....123335555********* PP

                          HHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HHHHHHHH CS
              UPF0020  88 vvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekLY 145
                          +v+ a  N+    ++d  +++q+da + r ++e+++ ++++npP+  ++++   + +L 
  REBASE::M.Ces8809II 246 MVRIASMNLMLHSIDDP-NVRQMDAMSKRyEEENKYTLVLANPPFKGSIDEGDINTTLV 303
                          **************998.6888899988888888**************99988777775 PP



Or compare REBASE::M.Ces8809II to CDD or PaperBLAST