PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.CfrMH15I to PF01170 (UPF0020)

REBASE::M.CfrMH15I has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.6e-13   36.2   0.0    5.2e-13   35.2   0.0    1.5  1  REBASE::M.CfrMH15I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH15I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.2   0.0   5.2e-13   5.2e-13      18     135 ..     172     280 ..     168     344 .. 0.70

  Alignments for each domain:
  == domain 1  score: 35.2 bits;  conditional E-value: 5.2e-13
             UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
                         + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  ++++
  REBASE::M.CfrMH15I 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 251
                         67999*********************77766666666...........3455556667788*******99888999999999988888888 PP

             UPF0020 109 qada..akLrlkegevdvivtnpPYGerl 135
                           +   + L   +++ dvivtnpP+G   
  REBASE::M.CfrMH15I 252 HDNTlnKPLSSWDEQLDVIVTNPPFGGTE 280
                         766511556677779***********643 PP



Or compare REBASE::M.CfrMH15I to CDD or PaperBLAST