PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.CfrMH16II to PF01170 (UPF0020)

REBASE::M.CfrMH16II has 469 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    3.9e-11   29.1   0.0    9.1e-11   27.9   0.0    1.6  1  REBASE::M.CfrMH16II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH16II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.9   0.0   9.1e-11   9.1e-11      17     142 ..     152     263 ..     149     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.9 bits;  conditional E-value: 9.1e-11
              UPF0020  17 AaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
                            a+v+l++   ge ++DP  GsG++l+ a     ++               ++e + +  k  g+++ ++  + +  N    g++ +i 
  REBASE::M.CfrMH16II 152 VEAIVKLTKPALGELIQDPATGSGGFLVAANDYILRAN-------------SIKEYKSNPPKYQGVEIEKNTRRICLMNTFLHGLDAEII 228
                          579*************************7765444444.............4555666777799************************** PP

              UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkale 142
                          + +a   + + + +  ++i++npP+G + gsk+ l+
  REBASE::M.CfrMH16II 229 YGDALTDDAE-SLEPANIILANPPFGSKAGSKRPLR 263
                          ***9999999.444899***************9774 PP



Or compare REBASE::M.CfrMH16II to CDD or PaperBLAST