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Align REBASE::M.CfrMH16II to PF01170 (UPF0020)

REBASE::M.CfrMH16II has 469 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
      5e-11   28.8   0.0    1.2e-10   27.6   0.0    1.6  1  REBASE::M.CfrMH16II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH16II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.6   0.0   1.2e-10   1.2e-10      16     142 ..     151     263 ..     148     321 .. 0.80

  Alignments for each domain:
  == domain 1  score: 27.6 bits;  conditional E-value: 1.2e-10
                          HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGE CS
              UPF0020  16 LAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
                          L  a+v+l++   ge ++DP  GsG++l+ a     ++               ++e + +  k  g++++++  + +  N    g++ +i
  REBASE::M.CfrMH16II 151 LVEAIVKLTKPALGELIQDPATGSGGFLVAANDYILRAN-------------SIKEYKSNPPKYQGVEIEKNTRRICLMNTFLHGLDAEI 227
                          5679*************************7754444444.............4555666777799************************* PP

                          EEEE--GGG--STTS---EEEE----------HHHHH CS
              UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlgskkale 142
                           + +a   + + + +  ++i++npP+G + gsk+ l+
  REBASE::M.CfrMH16II 228 IYGDALTDDAE-SLEPANIILANPPFGSKAGSKRPLR 263
                          ****9999999.444899***************9774 PP



Or compare REBASE::M.CfrMH16II to CDD or PaperBLAST