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Align REBASE::M.CfrMH16III to PF01170 (UPF0020)

REBASE::M.CfrMH16III has 539 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    1.5e-11   30.5   0.0    3.3e-11   29.4   0.0    1.5  1  REBASE::M.CfrMH16III  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH16III  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   29.4   0.0   3.3e-11   3.3e-11      18     174 ..     166     328 ..     162     344 .. 0.77

  Alignments for each domain:
  == domain 1  score: 29.4 bits;  conditional E-value: 3.3e-11
                           HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEE CS
               UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
                            ++vr  + +pge+++DP  G+ ++lI a +  +           + l +  e+ ++++  ++g++l ++  + a  N    g+++  +
  REBASE::M.CfrMH16III 166 NSMVRCIKPQPGEVIQDPAAGTAGFLIAADQYIKANTD-----DLYDL-SDKERVFQKNKAFIGVELVPSTRRLALMNCLLHGMEGDEK 248
                           68*************************87665555553.....33332.223333345555*****************99999988776 PP

                           ..EEE--GGG--.STTS---EEEE----------HHHH..HHHHH.......HHHHHHHHH-TT..-EEEEEESSHHHHH CS
               UPF0020 107 ..fsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYs.......eflrelkrvlrgggrlvlltsenkalek 174
                             + q +a  +  ++ ++ d+i++npP+G + g + ++  ++L+        +fl+ + r+l+ ggr+++++++n  +e+
  REBASE::M.CfrMH16III 249 gvVHQGNALGMAgQSLAKADIILANPPFGTSKGGEASItrDDLTYntsnkqlAFLQHIYRNLKPGGRAAVVLPDNVLFEA 328
                           225666666666766669*************99998886677864233333368999999***********999999886 PP



Or compare REBASE::M.CfrMH16III to CDD or PaperBLAST