REBASE::M.CfrMH16III has 539 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-11 30.9 0.0 2.4e-11 29.8 0.0 1.5 1 REBASE::M.CfrMH16III
Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH16III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.8 0.0 2.4e-11 2.4e-11 18 174 .. 166 328 .. 162 344 .. 0.77
Alignments for each domain:
== domain 1 score: 29.8 bits; conditional E-value: 2.4e-11
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
++vr + ++ge+++DP G+ ++lI a + + + y l + e+ ++++ ++g++l ++ + a N g+++ +
REBASE::M.CfrMH16III 166 NSMVRCIKPQPGEVIQDPAAGTAGFLIAADQYIKANT-----DDLYDL-SDKERVFQKNKAFIGVELVPSTRRLALMNCLLHGMEGDEK 248
68*************************7766555555.....333333.233333445556*****************99999988776 PP
UPF0020 107 ..fsqadaakLr.lkegevdvivtnpPYGerlgskkal..ekLYs.......eflrelkrvlrgggrlvlltaenkalek 174
+ q +a + ++ ++ d+i++npP+G + g + ++ ++L+ +fl+ + r+l+ ggr+++++++n +e+
REBASE::M.CfrMH16III 249 gvVHQGNALGMAgQSLAKADIILANPPFGTSKGGEASItrDDLTYntsnkqlAFLQHIYRNLKPGGRAAVVLPDNVLFEA 328
225666666666766669*************9999888667786423333336899999*************99999886 PP
Or compare REBASE::M.CfrMH16III to CDD or PaperBLAST