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Align REBASE::M.CfrMH17I to PF01170 (UPF0020)

REBASE::M.CfrMH17I has 489 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.1e-13   36.6   0.0    4.5e-13   35.5   0.0    1.5  1  REBASE::M.CfrMH17I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CfrMH17I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.5e-13   4.5e-13      18     170 ..     172     323 ..     168     344 .. 0.71

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.5e-13
                         HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEE CS
             UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefs 108
                         + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  ++++
  REBASE::M.CfrMH17I 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQALQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIR 251
                         67999*********************66666666666...........2334444446777*******99888999999999998888888 PP

                         E--G..GG--STTS---EEEE----------........HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSH CS
             UPF0020 109 qada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltsenk 170
                           +   + L   +++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++  
  REBASE::M.CfrMH17I 252 HDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGT 323
                         766511556677779***********6533211111111333455556677777888888888887777655 PP



Or compare REBASE::M.CfrMH17I to CDD or PaperBLAST