REBASE::M.Cgr12948II has 472 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-14 38.4 0.0 6.4e-13 34.9 0.0 2.2 2 REBASE::M.Cgr12948II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cgr12948II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.6 0.0 0.021 0.021 140 166 .. 65 91 .. 60 109 .. 0.78
2 ! 34.9 0.0 6.4e-13 6.4e-13 19 173 .. 153 308 .. 149 327 .. 0.81
Alignments for each domain:
== domain 1 score: 0.6 bits; conditional E-value: 0.021
UPF0020 140 alekLYseflrelkrvlrgggrlvllt 166
+l+k+Y+e+l+ l +++rg+ +++
REBASE::M.Cgr12948II 65 ELKKFYKELLEHLGEQCRGRIQEIYAG 91
6799**************955555544 PP
== domain 2 score: 34.9 bits; conditional E-value: 6.4e-13
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
++ +l++ ++ge+ DP CG+ ++ I a ++ + + l +e++ e++ + + g +l ++ + a Na +++ i++
REBASE::M.Cgr12948II 153 VMTELTNPQAGERCNDPACGTFGFMIAADRYIKDQT-----DDLFSLSQELQ-EFQINEAFSGGELVHETHRLALMNAMLHDIKGPIQL 235
6999*********************98766666666.....34444555544.444555699*************************** PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLY.......seflrelkrvlrgggrlvlltaenkale 173
+ +L ++ +dv++tnpP+G + g ++a ++L+ +fl+ + r l++ggr+++++++n +
REBASE::M.Cgr12948II 236 GD-TLSSLGKQMTGYDVVLTNPPFGTKKGGERATrDDLTfptsnkqLNFLQHIYRSLKKGGRAAVVLPDNVLFV 308
**.56668855557**************99999988897433332236899999999999***99999998776 PP
Or compare REBASE::M.Cgr12948II to CDD or PaperBLAST