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Align REBASE::M.Cin379I to PF01170 (UPF0020)

REBASE::M.Cin379I has 670 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    7.7e-14   38.0   0.0    1.6e-10   27.1   0.0    2.5  2  REBASE::M.Cin379I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cin379I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.1   0.0   1.6e-10   1.6e-10      17     103 ..     331     427 ..     327     437 .. 0.74
   2 !    8.1   0.0   0.00011   0.00011     118     140 ..     472     494 ..     452     504 .. 0.83

  Alignments for each domain:
  == domain 1  score: 27.1 bits;  conditional E-value: 1.6e-10
                        HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS........HHHHHHHHHH..HH--EEEEES-HHHHHHHHHHHHH CS
            UPF0020  17 AaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle........lkaeaeeear..aelklygsDldrrvvqgareNaek 98 
                          a+v++ + +++++ lDP CGsG++l+     +++ ++ +l ++++            e++e+ r  ae +++g+D+d+ + ++ar N   
  REBASE::M.Cin379I 331 IKAMVEMMNPNENTRVLDPACGSGGFLVMVLDHVRKQIAEKLYPEITDevllaakyNTYEVNERVReyAENSIFGFDFDPDLKKAARMNMVM 422
                        579************************965555555444444444444888887554445555555545555*****************999 PP

                        TT-GG CS
            UPF0020  99 agvgd 103
                        ag g+
  REBASE::M.Cin379I 423 AGDGH 427
                        88665 PP

  == domain 2  score: 8.1 bits;  conditional E-value: 0.00011
                        TTS---EEEE----------HHH CS
            UPF0020 118 kegevdvivtnpPYGerlgskka 140
                        ++g++d+i tnpP+G +++  ++
  REBASE::M.Cin379I 472 ARGKFDIIFTNPPFGAKVKVDED 494
                        5689***********99887665 PP



Or compare REBASE::M.Cin379I to CDD or PaperBLAST