REBASE::M.CinAA5I has 486 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.4e-11 27.9 0.0 1.9e-10 26.9 0.0 1.5 1 REBASE::M.CinAA5I
Domain annotation for each sequence (and alignments):
>> REBASE::M.CinAA5I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 26.9 0.0 1.9e-10 1.9e-10 19 141 .. 156 271 .. 151 315 .. 0.82
Alignments for each domain:
== domain 1 score: 26.9 bits; conditional E-value: 1.9e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
++v l k ge+ DP G+ ++ I a ++ y ++e e+++++ + g++l + + + a Na+ g++ +i++++
REBASE::M.CinAA5I 156 VMVDLMAPKIGERWTDPAAGTFGFMISADHYLREKTD------SYYHLSEKERKFQKYDAFSGVELVPDAHRLALMNARLHGMESTIHLND- 240
7999999*******************99888888873......44466777777777777*******************************. PP
UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal 141
+++ ++ +++d +++npP+G +lg +k
REBASE::M.CinAA5I 241 TLTEFGKSLKNFDGVLANPPFGTKLGGEKPT 271
66668756668**************977644 PP
Or compare REBASE::M.CinAA5I to CDD or PaperBLAST