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Align REBASE::M.CinAA5I to PF01170 (UPF0020)

REBASE::M.CinAA5I has 486 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.2e-10   27.5   0.0    2.4e-10   26.5   0.0    1.5  1  REBASE::M.CinAA5I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CinAA5I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.0   2.4e-10   2.4e-10      19     141 ..     156     271 ..     151     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 2.4e-10
                        HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE- CS
            UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqa 110
                        ++v l   k ge+  DP  G+ ++ I a    ++          +  ++e e+++++   + g++l + + + a  Na+  g++ +i++++ 
  REBASE::M.CinAA5I 156 VMVDLMAPKIGERWTDPAAGTFGFMISADHYLREKTD------SYYHLSEKERKFQKYDAFSGVELVPDAHRLALMNARLHGMESTIHLND- 240
                        79999999******************99888888773......44466666777776677*******************************. PP

                        -GGG--STTS---EEEE----------HHHH CS
            UPF0020 111 daakLrlkegevdvivtnpPYGerlgskkal 141
                          +++ ++ +++d +++npP+G +lg +k  
  REBASE::M.CinAA5I 241 TLTEFGKSLKNFDGVLANPPFGTKLGGEKPT 271
                        66668756668**************977644 PP



Or compare REBASE::M.CinAA5I to CDD or PaperBLAST