REBASE::M.Cis15098I has 495 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-13 36.8 0.1 3.3e-12 32.6 0.0 2.6 2 REBASE::M.Cis15098I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cis15098I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.5 0.0 0.19 0.19 64 116 .. 99 152 .. 83 162 .. 0.66
2 ! 32.6 0.0 3.3e-12 3.3e-12 20 132 .. 194 288 .. 188 320 .. 0.82
Alignments for each domain:
== domain 1 score: -2.5 bits; conditional E-value: 0.19
UPF0020 64 elkaeaeeearaelk..lygsDldrrvvqgareNaekagvgdliefsqadaakLr 116
+++ ++e +++++l+ ++ +D++++ + +r++ ++a +++lie + d +Lr
REBASE::M.Cis15098I 99 KILMKIEDDNKEKLEgiFRNIDFNSES-ELGRTKERNAALKNLIEDFADDSLDLR 152
466777777777776667777777765.677888888888888877666777776 PP
== domain 2 score: 32.6 bits; conditional E-value: 3.3e-12
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgd.liefs 108
l +l g+kdg++++DP CGsG++lI aa + + +lyg + + + + a+ N ++ d ie+
REBASE::M.Cis15098I 194 LAMLVGAKDGDRIYDPTCGSGSLLIKAAKEVGTQN----------------------FRLYGQERNGQTHALAKMNMFLHEIHDaVIEWG 261
77999***********************9887776......................469******************999987358*** PP
UPF0020 109 qadaakLrlkeg...evdvivtnpPYG 132
+ L+l+++ ++d iv+npP+
REBASE::M.Cis15098I 262 DTLRNPLHLENDrlmKFDKIVSNPPFS 288
********44433569*********95 PP
Or compare REBASE::M.Cis15098I to CDD or PaperBLAST