REBASE::M.Cje54107I has 494 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-11 29.8 0.0 8.2e-11 28.1 0.0 1.9 1 REBASE::M.Cje54107I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cje54107I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.1 0.0 8.2e-11 8.2e-11 18 138 .. 183 303 .. 179 365 .. 0.68
Alignments for each domain:
== domain 1 score: 28.1 bits; conditional E-value: 8.2e-11
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNa..ekagvgdl 104
+v++ + k+ e+++DP CGs ++l+E l + r++ ++ +ee + ++ l+g ++ + + + N ++ ++
REBASE::M.Cje54107I 183 KTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKD----RTKGKKANLSVEELEFlKNDALFGKEKTPLSYAMGVMNMilHEISSPNI 268
579*************************988776666....4444444455555444455559999999988888888861144444566 PP
UPF0020 105 iefsq..adaakLrlkegevdvivtnpPYGerlgsk 138
i+ ++ +++++++ ++++++vi++npP+G + +++
REBASE::M.Cje54107I 269 IKTNTlsKKITDIT-EKDKYEVILANPPFGGKEKEQ 303
66654115788888.7779**********9754443 PP
Or compare REBASE::M.Cje54107I to CDD or PaperBLAST