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Align REBASE::M.CjeF38011II to PF01170 (UPF0020)

REBASE::M.CjeF38011II has 494 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    2.9e-11   29.6   0.0    9.8e-11   27.8   0.0    1.9  1  REBASE::M.CjeF38011II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CjeF38011II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0   9.8e-11   9.8e-11      18     138 ..     183     303 ..     179     365 .. 0.68

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 9.8e-11
                            HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHH..HHTT-G CS
                UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNa..ekagvg 102
                              +v++ + kp e+++DP CGs ++l+E  l   +      r++  ++   +ee +  ++  l+g ++ +   + +  N   ++    
  REBASE::M.CjeF38011II 183 KTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYKD----RTKGKKANLSVEELEFlKNDALFGKEKTPLSYAMGVMNMilHEISSP 266
                            5799************************988776666....44444444455554444555599999999888888888611444445 PP

                            GGEEEEE..--GGG--STTS---EEEE----------H CS
                UPF0020 103 dliefsq..adaakLrlkegevdvivtnpPYGerlgsk 138
                            ++i+ ++  +++++++ ++++++vi++npP+G + +++
  REBASE::M.CjeF38011II 267 NIIKTNTlsKKITDIT-EKDKYEVILANPPFGGKEKEQ 303
                            6666654115788888.7779**********9654443 PP



Or compare REBASE::M.CjeF38011II to CDD or PaperBLAST