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Align REBASE::M.Cla11845IV to PF01170 (UPF0020)

REBASE::M.Cla11845IV has 750 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    4.1e-13   35.6   0.0    1.1e-12   34.2   0.0    1.7  1  REBASE::M.Cla11845IV  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cla11845IV  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   34.2   0.0   1.1e-12   1.1e-12      20     139 ..     311     464 ..     306     469 .. 0.81

  Alignments for each domain:
  == domain 1  score: 34.2 bits;  conditional E-value: 1.1e-12
                           HHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS...........................HHHHHHHHHH....HH- CS
               UPF0020  20 lvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle...........................lkaeaeeear....ael 77 
                           +v + + k+ge   DP +GsG++lI     +++i+++ + ++ +e                           lk+e+  +++    +  
  REBASE::M.Cla11845IV 311 MVDMIDPKEGEISCDPASGSGGFLIRIFSKVREIIQKDI-KNQYEawkkdnikdpenptieeankltekfeeLKKELSLDNKdsriY-- 396
                           99999********************99999999995555.444446999********************999888888888777453.. PP

                           -.....EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--.STTS---EEEE----------HH CS
               UPF0020  78 k.....lygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskk 139
                           k     +yg+D + r+ ++++ N    g g+          +++   e+++d+i+tnpP+G  +++  
  REBASE::M.Cla11845IV 397 KlsnfcIYGVDANDRMARTSKMNMIMHGDGHGGIHHHNGLLNVNgVFENQFDIILTNPPFGSQVEESD 464
                           344788*****************988876654433444455566555779************998765 PP



Or compare REBASE::M.Cla11845IV to CDD or PaperBLAST