REBASE::M.Cla13003I has 475 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.1e-15 41.0 0.0 3.4e-14 39.1 0.0 1.9 2 REBASE::M.Cla13003I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cla13003I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.1 0.0 3.4e-14 3.4e-14 18 138 .. 155 264 .. 151 269 .. 0.88
2 ? -1.9 0.0 0.13 0.13 148 188 .. 295 336 .. 293 342 .. 0.80
Alignments for each domain:
== domain 1 score: 39.1 bits; conditional E-value: 3.4e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
a+v + + + g ++ DP CG+G++l+Ea + k++ + e+ ++ l g D+ + v+ + N+ +g+ +
REBASE::M.Cla13003I 155 KAIVSVMKPQIGMSINDPACGTGGFLLEAYEYMRASS-----------KDKTKLENLKTKALSGTDISPLVTSLCAMNLYLHDIGGDESP 233
689999999*******************988777777...........6677777778888************************99999 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgsk 138
++ L l ++ +d+++tnpP+G++ ++k
REBASE::M.Cla13003I 234 VKTSDSLLSLGDQRYDMVLTNPPFGKKSSTK 264
9988888999999*************98776 PP
== domain 2 score: -1.9 bits; conditional E-value: 0.13
UPF0020 148 flrelkrvlrgggrlvlltaenkalekaleer.alrkvkekn 188
fl+ + +vl+ gg++++++++n +e ++e+ + r k +n
REBASE::M.Cla13003I 295 FLQHIMSVLKIGGKAAVVLPDNVLFEGGAGEKvRQRLLKDFN 336
889999999999**********99998888875555555555 PP
Or compare REBASE::M.Cla13003I to CDD or PaperBLAST