PaperBLAST – Find papers about a protein or its homologs

 

Align REBASE::M.Cly7489I to PF01170 (UPF0020)

REBASE::M.Cly7489I has 499 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    2.1e-10   26.7   0.1    2.5e-09   23.2   0.1    2.3  1  REBASE::M.Cly7489I  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cly7489I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   23.2   0.1   2.5e-09   2.5e-09      18     179 ..     187     350 ..     183     366 .. 0.67

  Alignments for each domain:
  == domain 1  score: 23.2 bits;  conditional E-value: 2.5e-09
                         HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--...EEEEES-HHHHHHHHHHHHHTT-GGGE CS
             UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelk...lygsDldrrvvqgareNaekagvgdli 105
                          a+v+ +++k g++++D   GsG++l+Ea    +             +k+++ ++  ++++   ++g ++ +     +  N    g++   
  REBASE::M.Cly7489I 187 KAMVETTDIKVGDTIYDGAVGSGGFLVEAFDFLTAGD----------KKEKLSAKDWETIQndtFFGQEKTSLGYVMGMMNMILHGIESPN 267
                         79**************************976555444..........23333333333333345999999999999999999999999887 PP

                         EEE.E--GGG--..STTS---EEEE-----....-----HHHH..HHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC--- CS
             UPF0020 106 efs.qadaakLr..lkegevdvivtnpPYG....erlgskkal..ekLYseflrelkrvlrgggrlvlltsenkalekaleer 179
                          ++ +   +++r  ++++  dvi++npP+G    + ++++  +  ++    f++ + ++l+ +gr++++++e   +++  +  
  REBASE::M.Cly7489I 268 VYKgNTLTQNIRdyQEKDRHDVILANPPFGgkekKQIQQNFPVesNATEILFMQHFMKMLKLEGRAAIVVPEGVLFQTNNAFT 350
                         7662344556777657779**********933222333333331123333577888888888888888888777776554444 PP



Or compare REBASE::M.Cly7489I to CDD or PaperBLAST