REBASE::M.Cly7489I has 499 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-10 26.9 0.1 2.1e-09 23.5 0.1 2.3 1 REBASE::M.Cly7489I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cly7489I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.5 0.1 2.1e-09 2.1e-09 18 178 .. 187 349 .. 183 366 .. 0.67
Alignments for each domain:
== domain 1 score: 23.5 bits; conditional E-value: 2.1e-09
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk...lygsDldrrvvqgareNaekagvgdli 105
a+v+ +++k g++++D GsG++l+Ea + +k+++ ++ ++++ ++g ++ + + N g++
REBASE::M.Cly7489I 187 KAMVETTDIKVGDTIYDGAVGSGGFLVEAFDFLTAGD----------KKEKLSAKDWETIQndtFFGQEKTSLGYVMGMMNMILHGIESPN 267
79**************************976555444..........23333333333333345999999999999999999999999887 PP
UPF0020 106 efs.qadaakLr..lkegevdvivtnpPYG....erlgskkal..ekLYseflrelkrvlrgggrlvlltaenkalekalee 178
++ + +++r ++++ dvi++npP+G + ++++ + ++ f++ + ++l+ +gr++++++e +++ +
REBASE::M.Cly7489I 268 VYKgNTLTQNIRdyQEKDRHDVILANPPFGgkekKQIQQNFPVesNATEILFMQHFMKMLKLEGRAAIVVPEGVLFQTNNAF 349
6662344556777657779**********93322233333333112333357888888888888888888887777655444 PP
Or compare REBASE::M.Cly7489I to CDD or PaperBLAST