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Align REBASE::M.Cpa598II to PF01170 (UPF0020)

REBASE::M.Cpa598II has 470 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    1.3e-10   27.5   0.0    2.8e-10   26.3   0.0    1.6  1  REBASE::M.Cpa598II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cpa598II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.3   0.0   2.8e-10   2.8e-10      19     145 ..     153     273 ..     149     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.3 bits;  conditional E-value: 2.8e-10
                         HHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE CS
             UPF0020  19 alvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsq 109
                         ++v+l + kpge+  DP  G+ ++ I a    ++          ++ +++  +e++++  + g +l ++  + a  Na    +++ i + +
  REBASE::M.Cpa598II 153 VMVKLIDPKPGEKCNDPAAGTFGFMIGADHYMKEKT------DNYFDLDTDLQEFQRTKAFSGCELVHETHRLALMNAMLHDIEGNIILGD 237
                         79************************9977666666......456667777777778888******************************* PP

                         --GGG--STTS---EEEE----------HHHH.HHHH CS
             UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkal.ekLY 145
                             + + k +++dv+++npP+G + g ++a  ++L+
  REBASE::M.Cpa598II 238 TLTNEGK-KMKDIDVVLSNPPFGTKKGGERATrDDLT 273
                         9999888.5558************9999998856665 PP



Or compare REBASE::M.Cpa598II to CDD or PaperBLAST