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Align REBASE::M.CpaAII to PF01170 (UPF0020)

REBASE::M.CpaAII has 516 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    8.9e-15   41.0   0.0    1.6e-14   40.2   0.0    1.4  1  REBASE::M.CpaAII  


Domain annotation for each sequence (and alignments):
>> REBASE::M.CpaAII  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.2   0.0   1.6e-14   1.6e-14      18     144 ..     183     319 ..     178     377 .. 0.79

  Alignments for each domain:
  == domain 1  score: 40.2 bits;  conditional E-value: 1.6e-14
                       HHHHHHTT--TTS-EEETT-TTSHHHH...HHHHHHTT--TTTT----SSHHHHHHHHHH....HH--...EEEEES-HHHHHHHHHHHHHTT CS
           UPF0020  18 aalvrlagwkpgepllDPmCGsGtilI...Eaallganiapgllrefvlelkaeaeeear....aelk...lygsDldrrvvqgareNaekag 100
                       + +v+l +  +++++ DP CG+ ++lI   E  l + ++    + ++ +++++++   +     ++ k   +yg+D+d+++v+ a  N+    
  REBASE::M.CpaAII 183 RMMVELMDPSAEDKICDPACGTAGFLInslEYILEKYTRSESVFTDEEGNIHNRIGDMMSpkdwDHFKkdmFYGFDFDASMVRIASMNLMLHS 275
                       67************************933344555555555555555555666666665565663333566********************** PP

                       -GGGEEEEE--GGG--.STTS---EEEE----------HHHHHHH CS
           UPF0020 101 vgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkalekL 144
                       ++d  +++q+d  + r ++e+++ ++++npP+  +++++  + +L
  REBASE::M.CpaAII 276 IDDP-NVRQMDSLSKRyEEENKYTLVLANPPFKGSIDKEDINPSL 319
                       *998.5677777777777888**************9998877666 PP



Or compare REBASE::M.CpaAII to CDD or PaperBLAST