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Align REBASE::M.Cpe23910II to PF01170 (UPF0020)

REBASE::M.Cpe23910II has 494 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence             Description
    ------- ------ -----    ------- ------ -----   ---- --  --------             -----------
    1.5e-11   30.5   0.0    5.3e-11   28.7   0.0    1.9  1  REBASE::M.Cpe23910II  


Domain annotation for each sequence (and alignments):
>> REBASE::M.Cpe23910II  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0   5.3e-11   5.3e-11      18     138 ..     183     303 ..     179     366 .. 0.68

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 5.3e-11
                           HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHH.HH--EEEEES-HHHHHHHHHHH..HHTT-GG CS
               UPF0020  18 aalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeear.aelklygsDldrrvvqgareNa..ekagvgd 103
                            a+v++ + k+ e+++DP CGs ++l+E  l   +      r++  ++   +ee +  ++  l+g ++ +   + +  N   ++    +
  REBASE::M.Cpe23910II 183 KAMVEVIDPKAKERIYDPSCGSCGFLVESFLHILYKD----RTKGEKANLSVEELEFlKNDALFGKEKTPLSYAMGVMNMilHEISSPN 267
                           79**************************988776666....555555555555555545555999999999999888886114444556 PP

                           GEEEEE..--GGG--STTS---EEEE----------H CS
               UPF0020 104 liefsq..adaakLrlkegevdvivtnpPYGerlgsk 138
                           +i+ ++  +++++++ ++++++vi++npP+G + +++
  REBASE::M.Cpe23910II 268 IIKTNTlsKKITDIT-EKEKYEVILANPPFGGKEKEQ 303
                           666654215788888.6669**********9654443 PP



Or compare REBASE::M.Cpe23910II to CDD or PaperBLAST